Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K4H28_RS12260 Genome accession   NZ_CP081150
Coordinates   2647361..2648593 (+) Length   410 a.a.
NCBI ID   WP_221005458.1    Uniprot ID   -
Organism   Deefgea tanakiae strain D25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642361..2653593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4H28_RS12240 (K4H28_12240) rpsP 2642715..2642957 (-) 243 WP_221005454.1 30S ribosomal protein S16 -
  K4H28_RS12245 (K4H28_12245) ffh 2643168..2644511 (-) 1344 WP_221005455.1 signal recognition particle protein -
  K4H28_RS12250 (K4H28_12250) - 2644594..2645403 (+) 810 WP_221005456.1 inner membrane protein YpjD -
  K4H28_RS12255 (K4H28_12255) pilB 2645646..2647349 (+) 1704 WP_221005457.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K4H28_RS12260 (K4H28_12260) pilC 2647361..2648593 (+) 1233 WP_221005458.1 type II secretion system F family protein Machinery gene
  K4H28_RS12265 (K4H28_12265) pilD 2648586..2649455 (+) 870 WP_221005459.1 A24 family peptidase Machinery gene
  K4H28_RS12270 (K4H28_12270) coaE 2649457..2650056 (+) 600 WP_221005460.1 dephospho-CoA kinase -
  K4H28_RS12275 (K4H28_12275) zapD 2650129..2650887 (+) 759 WP_221005461.1 cell division protein ZapD -
  K4H28_RS12280 (K4H28_12280) - 2650888..2651088 (+) 201 WP_221005462.1 DNA gyrase inhibitor YacG -
  K4H28_RS12285 (K4H28_12285) - 2651159..2651974 (-) 816 WP_221005463.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  K4H28_RS12290 (K4H28_12290) - 2652005..2652886 (+) 882 WP_221005464.1 HDOD domain-containing protein -
  K4H28_RS12295 (K4H28_12295) rplQ 2652940..2653329 (-) 390 WP_221005465.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44633.55 Da        Isoelectric Point: 9.9608

>NTDB_id=595393 K4H28_RS12260 WP_221005458.1 2647361..2648593(+) (pilC) [Deefgea tanakiae strain D25]
MATIKKAASTAVKEFTFHWKGKDRTGKAVSGEMRASGEAVVKNTLRRQGVNVASVKKIRMRGGSKITEQDIAMFTRQLAT
MLKSGVPLLTSFDIVAKGHSNPSVTKLLNEIKNDIETGSSLTQAFRKHPLQFDALYCNLVQAGEQAGILDALLARLATYK
EKILGVKKKIKSAMFYPTAIIVAAFVITAVIMIFVIPAFKDLFSSFGADLPMPTQVVIMISDFFTSYWYLIFGGIFGGFW
LFMNAWKRSEAMQIFMDRLVLKLPVLGDIVKNATIARWTRTLSTMFAAGVPLVESLESVGGAAGNYIYKIATKKIQSEVS
TGTSLTVAMQNANVFPNMVMQMTSIGEESGSLDAMLSKVADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVVAMYLP
IFKMGAAVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=595393 K4H28_RS12260 WP_221005458.1 2647361..2648593(+) (pilC) [Deefgea tanakiae strain D25]
ATGGCAACCATAAAAAAAGCAGCCAGCACAGCTGTGAAAGAATTTACTTTTCACTGGAAAGGGAAAGATCGAACAGGAAA
AGCCGTCAGTGGTGAAATGCGCGCTAGTGGTGAAGCTGTCGTCAAAAATACCTTAAGACGCCAAGGCGTTAACGTTGCCA
GCGTAAAAAAAATTCGCATGCGCGGCGGCAGCAAAATCACCGAACAAGATATTGCAATGTTTACACGACAACTTGCAACA
ATGCTGAAGTCAGGAGTTCCACTACTAACCTCATTTGATATAGTCGCCAAAGGGCACTCGAACCCCTCCGTGACTAAATT
GCTAAATGAAATAAAAAACGATATCGAGACAGGCTCTTCATTAACACAAGCTTTTAGAAAACACCCACTCCAATTTGATG
CACTCTATTGCAACCTTGTACAAGCCGGTGAGCAAGCCGGTATTCTTGATGCGCTACTAGCTAGGCTAGCCACATACAAA
GAAAAAATACTTGGTGTCAAAAAGAAAATCAAATCAGCTATGTTCTACCCAACGGCAATTATTGTTGCAGCTTTTGTGAT
AACTGCTGTGATTATGATTTTCGTAATCCCCGCATTTAAAGATTTATTCTCAAGCTTTGGCGCTGACCTACCAATGCCAA
CTCAAGTTGTCATCATGATTTCAGACTTCTTTACAAGTTACTGGTATTTGATTTTTGGTGGTATTTTTGGTGGTTTCTGG
CTCTTCATGAATGCGTGGAAACGCTCTGAAGCAATGCAAATATTTATGGATCGATTGGTGCTAAAACTACCAGTGCTTGG
TGATATTGTAAAAAATGCAACTATTGCCAGATGGACTAGAACGCTGTCTACCATGTTTGCCGCAGGTGTTCCCCTCGTTG
AATCACTAGAATCTGTCGGTGGGGCTGCAGGTAATTACATTTACAAAATAGCAACAAAAAAAATACAATCTGAAGTTAGC
ACAGGGACTAGCCTGACTGTTGCCATGCAAAATGCAAATGTCTTTCCAAACATGGTTATGCAAATGACATCGATCGGTGA
AGAATCTGGTTCATTAGATGCCATGCTCAGTAAAGTTGCCGATTATTACGAAGAAGAAGTAGATAATGCGGTTGAGGCTC
TATCAAGCTTGATGGAGCCAATCATCATGGTGGTATTAGGAACACTTATTGGCGGATTAGTTGTTGCAATGTATTTACCA
ATTTTCAAAATGGGTGCTGCAGTTGGTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.774

97.073

0.532
  pilC Pseudomonas stutzeri DSM 10701

50.99

98.537

0.502
  pilC Acinetobacter baumannii D1279779

51.005

97.073

0.495
  pilC Acinetobacter baylyi ADP1

49.874

96.829

0.483
  pilG Neisseria gonorrhoeae MS11

49.123

97.317

0.478
  pilG Neisseria meningitidis 44/76-A

48.622

97.317

0.473
  pilC Vibrio cholerae strain A1552

38.791

96.829

0.376
  pilC Vibrio campbellii strain DS40M4

37.25

97.561

0.363