Detailed information NTG0595394

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K4H28_RS12265
• Genome accession: NZ_CP081150
• Coordinates: 2648586..2649455 (+)
• Length: 289 a.a.
• NCBI ID: WP_221005459.1
• Uniprot ID: -
• Organism: Deefgea tanakiae strain D25
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2643586..2654455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K4H28_RS12250 (K4H28_12250)	-	2644594..2645403 (+)	810	WP_221005456.1	inner membrane protein YpjD	-
K4H28_RS12255 (K4H28_12255)	pilB	2645646..2647349 (+)	1704	WP_221005457.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K4H28_RS12260 (K4H28_12260)	pilC	2647361..2648593 (+)	1233	WP_221005458.1	type II secretion system F family protein	Machinery gene
K4H28_RS12265 (K4H28_12265)	pilD	2648586..2649455 (+)	870	WP_221005459.1	A24 family peptidase	Machinery gene
K4H28_RS12270 (K4H28_12270)	coaE	2649457..2650056 (+)	600	WP_221005460.1	dephospho-CoA kinase	-
K4H28_RS12275 (K4H28_12275)	zapD	2650129..2650887 (+)	759	WP_221005461.1	cell division protein ZapD	-
K4H28_RS12280 (K4H28_12280)	-	2650888..2651088 (+)	201	WP_221005462.1	DNA gyrase inhibitor YacG	-
K4H28_RS12285 (K4H28_12285)	-	2651159..2651974 (-)	816	WP_221005463.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
K4H28_RS12290 (K4H28_12290)	-	2652005..2652886 (+)	882	WP_221005464.1	HDOD domain-containing protein	-
K4H28_RS12295 (K4H28_12295)	rplQ	2652940..2653329 (-)	390	WP_221005465.1	50S ribosomal protein L17	-
K4H28_RS12300 (K4H28_12300)	rpoA	2653357..2654340 (-)	984	WP_221005466.1	DNA-directed RNA polymerase subunit alpha	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31933.13 Da
• Isoelectric Point: 8.9043

>NTDB_id=595394 K4H28_RS12265 WP_221005459.1 2648586..2649455(+) (pilD) [Deefgea tanakiae strain D25]
MDNFVTLLYDPIWLCYFIGLIGLTVGSFLNVVIHRLPIMLENDFKSECAAYFETRTSIQVTKTKYNLCTPRSACPKCGHT
ISALENIPVISWIALRGKCRKCKAKISIRYPIIELITAFLSAGLALHFGYSYALAGGLILVWFLIALIMIDADTYLLPDS
MTLPLIWVGLIFNSFNTFTTLDNAVYGAIAGYISLWSVYWVFKLATSKEGMGYGDFKLLAALGAWFGWSMIPMIILLSSF
AGAVIGIVMVLGKKRGWNKPMPFGPYLGVAGLLALIWGKDLSLALYGIS

Nucleotide

• Length: 870 bp

>NTDB_id=595394 K4H28_RS12265 WP_221005459.1 2648586..2649455(+) (pilD) [Deefgea tanakiae strain D25]
GTGGATAATTTTGTTACATTACTTTATGACCCAATATGGCTCTGCTACTTTATTGGGTTAATCGGTTTAACTGTTGGCAG
TTTTCTGAATGTAGTCATACACAGACTACCCATCATGCTTGAGAACGATTTCAAATCAGAGTGTGCTGCATACTTTGAAA
CAAGAACATCGATCCAAGTAACTAAAACAAAATATAACTTATGCACTCCCCGATCGGCCTGCCCCAAGTGCGGGCATACC
ATTTCTGCGCTTGAGAACATACCCGTGATCAGTTGGATTGCTTTACGGGGAAAGTGTCGTAAGTGCAAAGCTAAGATCAG
CATTCGCTACCCTATCATTGAACTCATTACCGCTTTTTTATCTGCTGGTCTAGCCTTACATTTTGGATATTCATATGCCT
TAGCAGGTGGCTTGATACTAGTGTGGTTTTTAATCGCACTAATCATGATTGATGCTGACACTTATTTACTACCCGACAGC
ATGACTCTGCCACTCATTTGGGTCGGGCTAATCTTCAACAGTTTTAATACCTTCACCACACTAGACAATGCAGTATATGG
TGCAATAGCAGGCTACATATCGCTCTGGAGCGTATACTGGGTATTCAAGCTTGCAACTAGCAAAGAAGGCATGGGCTACG
GTGACTTCAAACTATTAGCTGCTCTAGGTGCTTGGTTTGGCTGGAGCATGATCCCAATGATTATTCTATTGTCGTCATTT
GCCGGTGCAGTGATCGGAATTGTCATGGTCTTAGGAAAAAAAAGAGGCTGGAATAAGCCGATGCCTTTTGGTCCCTACTT
AGGCGTAGCAGGCTTACTTGCTTTAATTTGGGGCAAAGACCTGTCGCTTGCATTATACGGAATTAGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.46	94.81	0.488
pilD	Vibrio cholerae strain A1552	51.711	91.003	0.471
pilD	Neisseria gonorrhoeae MS11	51.779	87.543	0.453
pilD	Acinetobacter baumannii D1279779	49.621	91.349	0.453
pilD	Acinetobacter nosocomialis M2	49.621	91.349	0.453