Detailed information NTG0059430

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PSYCG_RS00340
• Genome accession: NC_021661
• Coordinates: 77602..78825 (-)
• Length: 407 a.a.
• NCBI ID: WP_020442461.1
• Uniprot ID: -
• Organism: Psychrobacter sp. G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 72602..83825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYCG_RS00320 (PSYCG_00505)	-	74628..74963 (+)	336	WP_020442457.1	pyrimidine/purine nucleoside phosphorylase	-
PSYCG_RS00325 (PSYCG_00510)	rlmB	75168..75938 (+)	771	WP_020442458.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PSYCG_RS00330 (PSYCG_00515)	coaE	75901..76593 (-)	693	WP_020442459.1	dephospho-CoA kinase	-
PSYCG_RS00335 (PSYCG_00520)	pilD	76677..77576 (-)	900	WP_020442460.1	prepilin peptidase	Machinery gene
PSYCG_RS00340 (PSYCG_00525)	pilC	77602..78825 (-)	1224	WP_020442461.1	type II secretion system F family protein	Machinery gene
PSYCG_RS00345 (PSYCG_00530)	pilB	79063..80775 (-)	1713	WP_020442462.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSYCG_RS00350 (PSYCG_00535)	tpiA	81173..81982 (+)	810	WP_020442463.1	triose-phosphate isomerase	-
PSYCG_RS00355 (PSYCG_00540)	secG	82211..82519 (+)	309	WP_011512446.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44523.43 Da
• Isoelectric Point: 9.7800

>NTDB_id=59430 PSYCG_RS00340 WP_020442461.1 77602..78825(-) (pilC) [Psychrobacter sp. G]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASSLRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFILIVFIGGAIIGF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide

• Length: 1224 bp

>NTDB_id=59430 PSYCG_RS00340 WP_020442461.1 77602..78825(-) (pilC) [Psychrobacter sp. G]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTATATGATGGCGTCAACCGTCGCGGGCAAAAGGTAAAAGGTGA
GACGACCAGTCGTAGCTTAGAGCTTGCCAAAGCCACGTTGCGCAAACAAGGTATTACGGTTAAAGGTATCAAGAAAAAGC
CAAAACCCTTATACACCTTTAAAAAGTCTATCAAGCCTATCGATATTGCTATTTTTGCACGTCAATTGGCAACCATGATG
AAAGCTGGGGTGCCATTGACTCAATCCTTTGAGATTGTCGCGGACTCTCTAGATAATCCGAGTATGAAAGACTTGGTGTT
ACAAATTAAAGCCGATATCGAAGCTGGTGGAACCTTTGCTTCATCATTACGAAGGCATCCCCGCTATTTTGACGATCTTT
TTTGCTCGCTTGTTGATTCTGGCGAGCAGTCAGGTGCGTTAGAAACCATGCTAGAGCGAGTTGCGACTTATAAAGAGAAA
AGCGAGCTGTTAAAAGCTAAAATTAAAAAAGCCATGAAATATCCTATCGCGGTCGTTGTAGTTGCTATTATTGTCACCAT
TATTCTGCTTGTTAAAGTCGTTCCAGTGTTTGCTGATTTATTTAGCTCTTTTGGTGCAGAATTACCTGCTTTTACCCAAA
TGGTCGTAGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCATCTTAATTGTATTTATTGGTGGCGCAATTATTGGCTTT
TCAGAAGCTAAGAAGCGTTCAAAGAAATTTCGTGATGTCCTAGACCGTGCGGTATTAAAAGCCCCAATATTTGGCAATAT
CGCTTACCAAGCAGTGATTGCGCGTTTTGCTCGTACGCTGTCCACGACTTTTGCTGCCGGCGTACCGCTTATTGATGCGC
TAGACTCTACTGCCGGTGCAGCAAATAATGTCGTATTTTATAACGCTATTCAACAAATCAAAAATGACGTCTCTACGGGA
CAACAATTACAGTTCTCGATACGTTCAACCAATTTATTTCCAAGTCTTGCTATTCAAATGGTCGGTATCGGTGAAGAGTC
CGGTAGTTTAGAAGAAATGCTAGATAAAGTAGCTGTTTATTACGAAAATGAAGTCGATAACGCGGTCGACGGACTAACTA
GCTTAATGGAACCAATGATTATGGCGGTACTTGGCGTATTAGTTGGTGGCTTGGTCATTGCCATGTACTTGCCAATCTTC
CAGATGGGCTCAGTAGTAGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

• Type II secretion system (T2SS), protein F (T2SSF) (276-398)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	69.608	100	0.698
pilC	Acinetobacter baylyi ADP1	68.627	100	0.688
pilC	Pseudomonas stutzeri DSM 10701	65.063	97.052	0.631
pilC	Legionella pneumophila strain ERS1305867	56.391	98.034	0.553
pilC	Vibrio cholerae strain A1552	43.137	100	0.432
pilG	Neisseria gonorrhoeae MS11	42.929	97.297	0.418
pilG	Neisseria meningitidis 44/76-A	42.677	97.297	0.415
pilC	Vibrio campbellii strain DS40M4	41.646	98.526	0.41