Detailed information NTG0059429

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSYCG_RS00335
• Genome accession: NC_021661
• Coordinates: 76677..77576 (-)
• Length: 299 a.a.
• NCBI ID: WP_020442460.1
• Uniprot ID: -
• Organism: Psychrobacter sp. G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 71677..82576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYCG_RS00310 (PSYCG_00495)	-	71721..72284 (-)	564	WP_011512437.1	YqgE/AlgH family protein	-
PSYCG_RS00315 (PSYCG_00500)	recN	72415..74094 (-)	1680	WP_020442456.1	DNA repair protein RecN	-
PSYCG_RS00320 (PSYCG_00505)	-	74628..74963 (+)	336	WP_020442457.1	pyrimidine/purine nucleoside phosphorylase	-
PSYCG_RS00325 (PSYCG_00510)	rlmB	75168..75938 (+)	771	WP_020442458.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PSYCG_RS00330 (PSYCG_00515)	coaE	75901..76593 (-)	693	WP_020442459.1	dephospho-CoA kinase	-
PSYCG_RS00335 (PSYCG_00520)	pilD	76677..77576 (-)	900	WP_020442460.1	prepilin peptidase	Machinery gene
PSYCG_RS00340 (PSYCG_00525)	pilC	77602..78825 (-)	1224	WP_020442461.1	type II secretion system F family protein	Machinery gene
PSYCG_RS00345 (PSYCG_00530)	pilB	79063..80775 (-)	1713	WP_020442462.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSYCG_RS00350 (PSYCG_00535)	tpiA	81173..81982 (+)	810	WP_020442463.1	triose-phosphate isomerase	-
PSYCG_RS00355 (PSYCG_00540)	secG	82211..82519 (+)	309	WP_011512446.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32979.72 Da
• Isoelectric Point: 8.6968

>NTDB_id=59429 PSYCG_RS00335 WP_020442460.1 76677..77576(-) (pilD) [Psychrobacter sp. G]
MQFIQLLQENMTIALVVFGLLGLCVGSFLNVVIHRTPLMMVSAWRQECSQFIYEQADMPREHTMPLVNIVATDTPITLSK
PASRCPHCTHKIKWYENIPLISWIVLRGRCSACKAAIGLRYPIVELVTALLSALVIYHFGVGIVGLSALVLVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNLQGWFVPPTQSIWGLLLGFLSLWIVVKIFYLITKKHGMGQGDFKLLAVLGAWLGPL
MLPLIILLSSLLGSIVGLILMKKQGESKPFAFGPYIAIAGIVALLYGSDIVNWYLGMYT

Nucleotide

• Length: 900 bp

>NTDB_id=59429 PSYCG_RS00335 WP_020442460.1 76677..77576(-) (pilD) [Psychrobacter sp. G]
ATGCAATTTATACAGTTACTACAAGAAAATATGACAATCGCTTTGGTCGTATTTGGTCTACTAGGGCTGTGCGTCGGTAG
CTTCTTAAACGTGGTAATTCATCGCACTCCGCTGATGATGGTATCGGCTTGGCGACAAGAGTGTAGCCAGTTTATATATG
AGCAAGCAGATATGCCGCGTGAGCATACGATGCCATTAGTTAATATTGTTGCCACTGATACACCTATTACCTTAAGTAAA
CCAGCATCGCGCTGCCCGCACTGTACCCATAAAATTAAATGGTATGAAAACATCCCTTTAATTAGCTGGATAGTACTACG
CGGACGTTGCTCAGCTTGCAAAGCGGCTATCGGGCTTCGATATCCTATCGTTGAGCTGGTCACTGCTCTGCTATCTGCAC
TAGTCATTTATCATTTTGGCGTCGGAATAGTAGGGCTGTCGGCATTAGTTTTAGTCTGGACACTCATCGCCTTAACTGGT
ATCGATTTTGATACACAGTTATTGCCTGACCGCTTAACTTTTCCATTAGCAGGGCTAGGATTGGCGGTCAATTTACAAGG
TTGGTTTGTGCCCCCTACTCAGTCGATATGGGGCCTGTTATTGGGATTTTTATCGTTATGGATAGTGGTCAAGATATTTT
ATTTAATCACCAAAAAGCATGGTATGGGACAAGGCGACTTTAAATTATTGGCAGTACTGGGCGCGTGGCTTGGTCCTCTG
ATGTTACCATTGATTATCCTTCTGTCGTCTTTACTTGGCTCCATCGTTGGTCTTATCTTGATGAAAAAACAAGGTGAGAG
CAAGCCTTTTGCCTTTGGTCCTTATATTGCTATTGCCGGTATTGTGGCGTTGTTATACGGCTCAGATATCGTTAATTGGT
ATTTAGGCATGTATACTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (149-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.903	96.321	0.538
pilD	Acinetobacter baumannii D1279779	55.709	96.656	0.538
pilD	Vibrio campbellii strain DS40M4	48.084	95.987	0.462
pilD	Vibrio cholerae strain A1552	48.929	93.645	0.458
pilD	Neisseria gonorrhoeae MS11	41.429	93.645	0.388