Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0I31_RS17780 Genome accession   NZ_CP080418
Coordinates   4118956..4120227 (+) Length   423 a.a.
NCBI ID   WP_220079236.1    Uniprot ID   -
Organism   Shewanella spartinae strain FJAT-53681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4113956..4125227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I31_RS17765 (K0I31_17765) - 4114483..4116147 (+) 1665 WP_220079233.1 Wzy polymerase domain-containing protein -
  K0I31_RS17770 (K0I31_17770) - 4116622..4116999 (+) 378 WP_220079234.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0I31_RS17775 (K0I31_17775) pilB 4117217..4118923 (+) 1707 WP_220079235.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0I31_RS17780 (K0I31_17780) pilC 4118956..4120227 (+) 1272 WP_220079236.1 type II secretion system F family protein Machinery gene
  K0I31_RS17785 (K0I31_17785) pilD 4120271..4121182 (+) 912 WP_220079237.1 A24 family peptidase Machinery gene
  K0I31_RS17790 (K0I31_17790) coaE 4121203..4121808 (+) 606 WP_011867237.1 dephospho-CoA kinase -
  K0I31_RS17795 (K0I31_17795) zapD 4121817..4122551 (+) 735 WP_011867238.1 cell division protein ZapD -
  K0I31_RS17800 (K0I31_17800) yacG 4122600..4122812 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0I31_RS17805 (K0I31_17805) mutT 4122813..4123202 (+) 390 WP_011867240.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46152.41 Da        Isoelectric Point: 10.2269

>NTDB_id=592770 K0I31_RS17780 WP_220079236.1 4118956..4120227(+) (pilC) [Shewanella spartinae strain FJAT-53681]
MATASLAKTTTKTKKQKAAKVQPKVVTFEWKGTNRDGKKTSGELRGTSSAEIKAQLKSQGVNPKVVKKKAEPLFKRDPKI
KAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPKMRELLGTIVSDVQAGIPLSDSLRPHKKYFDDLYVDLVGAGEHS
GSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVIVAIAVTTLLLLFVVPQFESIFAGFGAELPAFTQMIVGLSRWLQS
SWYFFVIGIIATVWAFRRAHLNSQNFRNRIDELVLKIPVIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNY
VYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDALSSLIEPMMMVVI
GTLVGGLIVGMYLPIFQLGNVVG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=592770 K0I31_RS17780 WP_220079236.1 4118956..4120227(+) (pilC) [Shewanella spartinae strain FJAT-53681]
ATGGCTACCGCATCACTTGCAAAAACAACGACTAAAACAAAAAAGCAAAAGGCAGCCAAGGTTCAACCTAAAGTTGTCAC
TTTCGAATGGAAGGGAACCAATCGTGACGGTAAAAAAACCAGTGGTGAACTGCGCGGCACATCATCGGCAGAAATTAAAG
CCCAATTAAAATCTCAAGGGGTTAACCCGAAGGTTGTTAAGAAGAAAGCTGAACCATTATTTAAACGTGATCCAAAAATT
AAAGCAATGGACATAGCCATGATCACCCGCCAAATAGCAACTATGCTGGCGGCTGGTGTTCCCATTGTTACCACCCTTGA
AATGCTGGGGCGTGGACATGAAAAACCAAAGATGCGTGAGTTATTAGGTACCATAGTAAGCGATGTCCAAGCCGGTATTC
CTTTATCCGACTCTCTAAGACCCCACAAAAAATATTTTGATGATCTCTATGTGGATTTAGTTGGTGCGGGTGAGCATTCT
GGCTCGCTAGACGCTGTATTCGATCGTATTGCAACCTATCGAGAAAAAGCTGAGGCACTCAAATCAAAAATTAAAAAAGC
GATGTTTTACCCTGCTGCAGTGGTAATCGTAGCCATAGCAGTTACTACTTTATTACTTCTTTTTGTTGTACCTCAGTTTG
AAAGCATTTTTGCGGGCTTTGGTGCTGAGTTACCAGCTTTTACACAAATGATCGTGGGATTATCCCGCTGGTTACAATCA
TCATGGTATTTTTTTGTCATTGGAATTATTGCAACAGTTTGGGCCTTCAGGAGGGCACATCTTAATTCTCAAAACTTCCG
TAATAGAATCGATGAACTCGTTCTAAAAATTCCAGTAATAGGAGACATACTCCATAAAGCGGCAATGGCACGCTTTGCAA
GAACCTTAGCTACAACTTTTGCTGCTGGGGTGCCACTAATTGATGGGCTCGAATCTGCAGCAGGCGCTTCAGGTAACTAT
GTCTATCGTAGCGCACTGACTAAAGTTCGTACCGAGGTAATGTCGGGTATGCAGATGAATGTCGCCATGCGGACCACAGG
TCTCTTTCCCGATATGCTTATCCAGATGGTTATGATAGGTGAAGAATCTGGTGGACTCGACGAGATGCTTAATAAAGTCG
CCAACATTTACGAGATGCAAGTCGATGATGCAGTTGACGCTTTATCAAGCTTAATAGAACCTATGATGATGGTCGTAATA
GGTACCCTAGTAGGTGGTTTGATTGTCGGTATGTATCTTCCTATCTTCCAGTTAGGCAACGTTGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-211)

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.975

93.381

0.541
  pilC Acinetobacter baumannii D1279779

50

96.927

0.485
  pilC Legionella pneumophila strain ERS1305867

50

95.508

0.478
  pilC Acinetobacter baylyi ADP1

49.14

96.217

0.473
  pilC Vibrio cholerae strain A1552

48.039

96.454

0.463
  pilC Vibrio campbellii strain DS40M4

44.554

95.508

0.426
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395