Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0I31_RS17785 Genome accession   NZ_CP080418
Coordinates   4120271..4121182 (+) Length   303 a.a.
NCBI ID   WP_220079237.1    Uniprot ID   -
Organism   Shewanella spartinae strain FJAT-53681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4115271..4126182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I31_RS17770 (K0I31_17770) - 4116622..4116999 (+) 378 WP_220079234.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0I31_RS17775 (K0I31_17775) pilB 4117217..4118923 (+) 1707 WP_220079235.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0I31_RS17780 (K0I31_17780) pilC 4118956..4120227 (+) 1272 WP_220079236.1 type II secretion system F family protein Machinery gene
  K0I31_RS17785 (K0I31_17785) pilD 4120271..4121182 (+) 912 WP_220079237.1 A24 family peptidase Machinery gene
  K0I31_RS17790 (K0I31_17790) coaE 4121203..4121808 (+) 606 WP_011867237.1 dephospho-CoA kinase -
  K0I31_RS17795 (K0I31_17795) zapD 4121817..4122551 (+) 735 WP_011867238.1 cell division protein ZapD -
  K0I31_RS17800 (K0I31_17800) yacG 4122600..4122812 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0I31_RS17805 (K0I31_17805) mutT 4122813..4123202 (+) 390 WP_011867240.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33745.93 Da        Isoelectric Point: 6.3252

>NTDB_id=592771 K0I31_RS17785 WP_220079237.1 4120271..4121182(+) (pilD) [Shewanella spartinae strain FJAT-53681]
MTDFIQLMAQYPLLFAAISFAFAAVIGSFLNVVIHRLPVMMKREWQEECNQYLDEYHKANVTEIKDKLAQPIDDFPEKYN
LIVPGSSCPKCKTDIKPWHNIPIVGWLMLGGKCAHCKTNISVRYPIIEALTGFAVAYLAYHFGPTWQFVFATILTFGLVA
LTGIDLDEMLLPDQVTLPLLWIGLLINLNGTYVSITDAVIGASAGYMSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSIVGALVGLLLIVNKKINSGNPIPFGPYIALAGWIAMIWGENIVNWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=592771 K0I31_RS17785 WP_220079237.1 4120271..4121182(+) (pilD) [Shewanella spartinae strain FJAT-53681]
ATGACTGATTTTATCCAATTAATGGCTCAGTACCCTTTGCTGTTTGCCGCAATTTCCTTTGCCTTTGCCGCGGTCATTGG
CAGCTTTTTAAATGTAGTGATTCATCGCCTTCCCGTGATGATGAAAAGAGAATGGCAAGAGGAATGCAACCAATATCTCG
ACGAATACCACAAGGCTAACGTTACAGAAATTAAAGATAAGCTAGCCCAGCCTATCGATGATTTTCCAGAAAAATACAAT
CTTATCGTTCCGGGCTCATCTTGCCCTAAGTGTAAAACCGATATAAAACCTTGGCACAACATCCCCATAGTTGGGTGGTT
AATGCTAGGAGGTAAGTGCGCTCATTGTAAGACAAATATTTCTGTAAGGTACCCCATCATAGAAGCCTTAACAGGGTTTG
CAGTGGCCTACCTCGCTTACCATTTTGGCCCAACTTGGCAATTTGTCTTTGCCACCATTCTGACCTTTGGTCTAGTAGCC
TTAACAGGAATAGATCTCGATGAGATGCTGCTGCCGGATCAGGTCACTTTGCCACTCTTATGGATTGGCCTACTTATAAA
TCTAAATGGCACCTATGTCTCGATTACAGATGCGGTCATTGGCGCTTCTGCAGGCTATATGAGCCTTTGGAGCGTGTTCT
GGGGATTCAAAATATTAACCGGCAAGGAAGGTATGGGTTATGGCGACTTTAAGCTATTAGCCGTATTCGGTGCCTGGTTT
GGCTGGCAATTACTGCCCCTCATCATCCTGTTATCCTCCATTGTTGGCGCACTAGTTGGCTTGCTGCTCATCGTCAATAA
GAAGATCAATTCTGGCAATCCCATACCATTTGGCCCTTATATCGCCTTAGCAGGCTGGATAGCCATGATTTGGGGTGAGA
ATATAGTAAATTGGTACCTATCTACCTTATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-142)

Type IV leader peptidase family (Peptidase_A24)

(154-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.667

99.01

0.492
  pilD Vibrio campbellii strain DS40M4

49.333

99.01

0.488
  pilD Acinetobacter nosocomialis M2

48.78

94.719

0.462
  pilD Acinetobacter baumannii D1279779

48.432

94.719

0.459
  pilD Neisseria gonorrhoeae MS11

42.295

100

0.426