Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H81_RS17890 Genome accession   NZ_CP080417
Coordinates   4141222..4142487 (+) Length   421 a.a.
NCBI ID   WP_220059208.1    Uniprot ID   -
Organism   Shewanella halotolerans strain FJAT-53555     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4136222..4147487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H81_RS17875 (K0H81_17875) nadC 4137156..4138037 (+) 882 WP_220059205.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K0H81_RS17880 (K0H81_17880) - 4138975..4139385 (+) 411 WP_220059206.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H81_RS17885 (K0H81_17885) pilB 4139489..4141195 (+) 1707 WP_220059207.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H81_RS17890 (K0H81_17890) pilC 4141222..4142487 (+) 1266 WP_220059208.1 type II secretion system F family protein Machinery gene
  K0H81_RS17895 (K0H81_17895) pilD 4142545..4143456 (+) 912 WP_220059209.1 A24 family peptidase Machinery gene
  K0H81_RS17900 (K0H81_17900) coaE 4143477..4144082 (+) 606 WP_220059210.1 dephospho-CoA kinase -
  K0H81_RS17905 (K0H81_17905) zapD 4144091..4144825 (+) 735 WP_220059211.1 cell division protein ZapD -
  K0H81_RS17910 (K0H81_17910) yacG 4144874..4145086 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0H81_RS17915 (K0H81_17915) mutT 4145087..4145476 (+) 390 WP_220059212.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46173.45 Da        Isoelectric Point: 10.0508

>NTDB_id=592747 K0H81_RS17890 WP_220059208.1 4141222..4142487(+) (pilC) [Shewanella halotolerans strain FJAT-53555]
MASASLAKAKSKKEKTAKAQPKVVTFEWKGTNRDGKKTSGELRGISSAEIKAQLKSQGVNPKVVKKKADPLFKNDPKIRA
MDIAMITRQIATMLAAGVPIVTTLEMLGRSHEKPKMRELLGAIVNDVQSGIPLSDSLRPHRQYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIGVTALLLLMVVPQFEEIFKGFGAELPAFTQMIVGISRWLQSSW
YFFVIGLIIFVFMFRRAHLTSQHFRDRVDEFVLKIPAIGPILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALHKVRTEVMSGMQMNVAMRTTELFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=592747 K0H81_RS17890 WP_220059208.1 4141222..4142487(+) (pilC) [Shewanella halotolerans strain FJAT-53555]
ATGGCTAGCGCATCACTCGCAAAAGCAAAAAGCAAAAAGGAAAAGACAGCCAAAGCGCAACCCAAAGTTGTCACCTTCGA
ATGGAAAGGTACAAACCGTGATGGAAAGAAAACTTCCGGTGAATTAAGAGGCATTTCATCTGCTGAAATTAAAGCTCAGC
TAAAATCCCAAGGAGTGAATCCCAAGGTAGTCAAAAAGAAAGCTGACCCTCTATTCAAAAATGACCCTAAAATCAGAGCG
ATGGATATCGCTATGATCACTCGTCAAATTGCAACCATGCTAGCTGCTGGCGTGCCAATTGTAACAACACTCGAAATGCT
TGGAAGAAGTCATGAAAAACCCAAAATGCGTGAGTTGTTAGGTGCTATCGTTAACGATGTACAGTCAGGAATTCCACTCT
CAGACTCTTTAAGACCTCATAGACAATATTTCGATGATCTATACGTTGACCTTGTCGCTGCTGGCGAACACTCTGGCTCA
TTAGATGCTGTATTCGATCGTATTGCCACCTACCGAGAAAAAGCAGAAGCCCTAAAATCAAAAATTAAAAAAGCCATGTT
TTACCCTGCAGCAGTGGTAGTAGTCGCTATAGGTGTAACAGCATTATTATTGCTCATGGTTGTTCCTCAATTTGAAGAGA
TCTTTAAAGGTTTTGGAGCAGAGCTCCCCGCCTTTACTCAGATGATTGTCGGCATATCAAGATGGTTACAATCCTCTTGG
TATTTCTTCGTAATTGGATTAATCATTTTCGTCTTCATGTTTAGAAGAGCACATCTTACGTCTCAACACTTTCGTGATCG
AGTCGACGAGTTTGTTTTAAAGATCCCAGCTATTGGCCCCATCCTCCATAAAGCGGCTATGGCAAGATTTGCTCGCACCC
TTGCAACCACCTTTGCAGCTGGTGTACCTCTTATTGATGGACTGGAATCAGCTGCCGGGGCATCTGGCAATTATGTTTAT
CGTAGTGCGCTTCATAAAGTTAGAACTGAGGTTATGTCAGGTATGCAGATGAATGTTGCAATGCGTACTACGGAGCTTTT
TCCCGATATGCTCATCCAGATGGTCATGATTGGTGAAGAATCCGGCGGACTCGACGAGATGCTCAACAAAGTCGCTAATA
TTTATGAAATGCAGGTTGATGATGCCGTTGACGGCCTATCTAGCCTCATTGAGCCTATCATGATGGTCGTTATTGGTACA
CTCGTCGGAGGCTTAATTGTAGGTATGTATCTTCCTATTTTCCAACTAGGTAAAGTAGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.696

93.824

0.523
  pilC Legionella pneumophila strain ERS1305867

49.507

96.437

0.477
  pilC Acinetobacter baumannii D1279779

49.024

97.387

0.477
  pilC Acinetobacter baylyi ADP1

49.37

94.299

0.466
  pilC Vibrio cholerae strain A1552

47.739

94.537

0.451
  pilC Vibrio campbellii strain DS40M4

46.173

96.2

0.444
  pilG Neisseria meningitidis 44/76-A

40.988

96.2

0.394
  pilG Neisseria gonorrhoeae MS11

40.988

96.2

0.394