Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0H81_RS17895 Genome accession   NZ_CP080417
Coordinates   4142545..4143456 (+) Length   303 a.a.
NCBI ID   WP_220059209.1    Uniprot ID   -
Organism   Shewanella halotolerans strain FJAT-53555     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4137545..4148456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H81_RS17880 (K0H81_17880) - 4138975..4139385 (+) 411 WP_220059206.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H81_RS17885 (K0H81_17885) pilB 4139489..4141195 (+) 1707 WP_220059207.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H81_RS17890 (K0H81_17890) pilC 4141222..4142487 (+) 1266 WP_220059208.1 type II secretion system F family protein Machinery gene
  K0H81_RS17895 (K0H81_17895) pilD 4142545..4143456 (+) 912 WP_220059209.1 A24 family peptidase Machinery gene
  K0H81_RS17900 (K0H81_17900) coaE 4143477..4144082 (+) 606 WP_220059210.1 dephospho-CoA kinase -
  K0H81_RS17905 (K0H81_17905) zapD 4144091..4144825 (+) 735 WP_220059211.1 cell division protein ZapD -
  K0H81_RS17910 (K0H81_17910) yacG 4144874..4145086 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0H81_RS17915 (K0H81_17915) mutT 4145087..4145476 (+) 390 WP_220059212.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33564.82 Da        Isoelectric Point: 7.2948

>NTDB_id=592748 K0H81_RS17895 WP_220059209.1 4142545..4143456(+) (pilD) [Shewanella halotolerans strain FJAT-53555]
MTESLQLMAQYPLLFAAISFVFASTIGSFLNVVIHRLPVMMKREWQLECNQYLDEYHNATVADIKDKLAQPIDDYPEKYN
LVVPGSACPKCKTSIKPWHNLPVLGWLMLGGKCAHCKARISARYPVIEALTGLAVAYLAYHFGPTWQFVFATILTFGLVA
LTGIDLDEMLLPDQITLPLLWIGLLINLNGTFVSITDAVIGASAGYMSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSIVGALVGLLLIVNKKINSGNPIPFGPYIALAGWIAMIWGEKIVNWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=592748 K0H81_RS17895 WP_220059209.1 4142545..4143456(+) (pilD) [Shewanella halotolerans strain FJAT-53555]
ATGACAGAATCTCTCCAATTAATGGCTCAGTACCCTTTGCTGTTTGCCGCAATTTCCTTTGTCTTCGCCTCTACAATTGG
CAGTTTTTTAAATGTGGTGATTCATCGCCTTCCCGTGATGATGAAAAGAGAGTGGCAGCTAGAATGTAACCAATATCTCG
ATGAATACCACAACGCAACCGTTGCGGATATTAAAGATAAATTAGCTCAGCCGATCGATGACTATCCAGAAAAATACAAT
CTTGTGGTACCTGGCTCTGCCTGCCCAAAATGTAAAACAAGCATAAAGCCTTGGCATAATCTACCAGTATTAGGCTGGTT
GATGCTTGGTGGGAAATGCGCTCATTGTAAAGCACGTATCTCAGCAAGATACCCAGTCATTGAAGCCTTAACTGGATTAG
CGGTTGCCTATCTGGCCTACCATTTTGGCCCAACTTGGCAATTTGTCTTTGCCACCATTCTGACCTTTGGTCTAGTAGCC
TTAACAGGAATAGATCTCGATGAGATGCTGCTGCCGGATCAGATCACTTTGCCACTCTTATGGATTGGCCTACTTATAAA
TCTAAATGGCACCTTTGTCTCGATTACAGATGCGGTCATTGGCGCTTCTGCAGGCTATATGAGCCTTTGGAGCGTGTTCT
GGGGATTCAAAATATTAACCGGCAAGGAAGGTATGGGTTATGGCGACTTTAAGCTATTAGCCGTATTCGGTGCCTGGTTT
GGCTGGCAATTACTGCCCCTCATCATCCTGTTATCCTCCATTGTCGGCGCACTAGTTGGCTTGCTGCTCATCGTCAATAA
GAAAATCAATTCTGGCAACCCCATACCATTTGGCCCTTATATCGCCTTAGCAGGTTGGATAGCCATGATTTGGGGTGAGA
AAATCGTAAACTGGTACCTATCTACCTTATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-142)

Type IV leader peptidase family (Peptidase_A24)

(154-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.831

99.34

0.505
  pilD Vibrio campbellii strain DS40M4

49.333

99.01

0.488
  pilD Acinetobacter baumannii D1279779

48.432

94.719

0.459
  pilD Acinetobacter nosocomialis M2

48.432

94.719

0.459
  pilD Neisseria gonorrhoeae MS11

41.584

100

0.416