Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H80_RS17545 Genome accession   NZ_CP080416
Coordinates   4046563..4047831 (+) Length   422 a.a.
NCBI ID   WP_011867235.1    Uniprot ID   A3QIK7
Organism   Shewanella aegiceratis strain FJAT-53532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4041563..4052831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H80_RS19780 (K0H80_17530) - 4042575..4042928 (+) 354 WP_220072427.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H80_RS17535 (K0H80_17535) - 4043105..4044475 (-) 1371 WP_220072428.1 O-antigen ligase family protein -
  K0H80_RS17540 (K0H80_17540) pilB 4044817..4046526 (+) 1710 WP_220072429.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H80_RS17545 (K0H80_17545) pilC 4046563..4047831 (+) 1269 WP_011867235.1 type II secretion system F family protein Machinery gene
  K0H80_RS17550 (K0H80_17550) pilD 4047869..4048780 (+) 912 WP_220072430.1 A24 family peptidase Machinery gene
  K0H80_RS17555 (K0H80_17555) coaE 4048800..4049405 (+) 606 WP_220072431.1 dephospho-CoA kinase -
  K0H80_RS17560 (K0H80_17560) zapD 4049414..4050148 (+) 735 WP_144202495.1 cell division protein ZapD -
  K0H80_RS17565 (K0H80_17565) yacG 4050197..4050409 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0H80_RS17570 (K0H80_17570) mutT 4050410..4050799 (+) 390 WP_011867240.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45843.05 Da        Isoelectric Point: 10.0314

>NTDB_id=592723 K0H80_RS17545 WP_011867235.1 4046563..4047831(+) (pilC) [Shewanella aegiceratis strain FJAT-53532]
MATASLAKTSTKKQKAAKAQPKVVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLFKSDPKIKA
MDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQYFDDLYVDLVGAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSW
YFFVIGIVVSIWSFKKAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYEMQVDDAVDGLSSLIEPMMMVVIGT
LVGGLIIGMYLPIFQMGNVVGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=592723 K0H80_RS17545 WP_011867235.1 4046563..4047831(+) (pilC) [Shewanella aegiceratis strain FJAT-53532]
ATGGCTACCGCATCGCTTGCTAAAACATCAACTAAAAAGCAAAAAGCAGCCAAAGCTCAACCTAAAGTGGTCACCTTTGA
ATGGAAGGGAACTAACCGCGACGGGAAAAAAACCTCAGGCGAATTGAGAGGGACTTCACCTGCCGAAATAAAAGCACAAC
TAAAATCGCAAGGCGTCAACCCAAAAGTTGTCAAAAAGAAAGCTGAACCACTATTTAAGAGTGATCCAAAAATAAAGGCA
ATGGATATCGCCATGATCACACGCCAGATTGCGACAATGTTGGCGGCAGGTGTCCCCATTGTAACAACCCTTGAGATGCT
AGGGCGCGGTCACGAAAAGCCTAGAATGCGAGAGTTACTTGGAACAATTGTGGCTGATGTGCAGTCCGGTATACCACTAT
CCGACTCTTTAAAACCCCACAGACAATATTTTGATGATCTTTACGTTGATTTGGTTGGTGCTGGAGAACACTCAGGTTCC
CTAGATGCCGTATTTGACAGAATTGCAACGTACAGAGAAAAAGCTGAAGCCCTAAAATCAAAAATAAAAAAGGCAATGTT
CTATCCTGCTGCCGTTATCGTTGTTGCTATAGCTGTTACAACACTATTATTGTTATTTGTTGTACCGCAGTTTGAAGACA
TATTTGCTGGTTTTGGAGCTGAGCTCCCGGCATTTACACAAATGATTGTAAGTATCTCGCGATGGCTTCAATCTTCTTGG
TATTTTTTTGTAATAGGCATAGTTGTCTCTATTTGGTCATTTAAAAAGGCTCATTTAAAATCGGCGGGATTCCGAAATAA
AGTAGATGAGCTAGTGCTGAAAATCCCAATTATTGGTGAAATTTTACACAAGGCGGCAATGGCAAGATTTGCGAGAACTT
TAGCAACAACCTTTGCAGCAGGTGTTCCTCTAATTGATGGACTAGAATCTGCCGCAGGAGCATCTGGTAACTATGTCTAC
CGCAGCGCACTTACGAAAGTTCGTACAGAGGTAATGTCTGGGATGCAAATGAACGTCGCTATGCGTACCACAGGACTTTT
CCCGGACATGCTTATCCAAATGGTTATGATAGGTGAAGAATCTGGTGGCCTCGATGATATGCTAAATAAGATAGCGAACA
TATATGAAATGCAAGTAGATGACGCAGTTGACGGATTATCTAGCTTAATTGAACCAATGATGATGGTCGTCATTGGTACA
CTCGTTGGGGGGTTAATTATAGGGATGTACCTCCCTATCTTCCAGATGGGTAATGTCGTCGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3QIK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.757

96.445

0.547
  pilC Acinetobacter baumannii D1279779

50.976

97.156

0.495
  pilC Acinetobacter baylyi ADP1

50.123

96.445

0.483
  pilC Legionella pneumophila strain ERS1305867

49.015

96.209

0.472
  pilC Vibrio cholerae strain A1552

46.569

96.682

0.45
  pilC Vibrio campbellii strain DS40M4

45.025

95.261

0.429
  pilG Neisseria meningitidis 44/76-A

41.235

95.972

0.396
  pilG Neisseria gonorrhoeae MS11

41.235

95.972

0.396