Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0H80_RS17550 Genome accession   NZ_CP080416
Coordinates   4047869..4048780 (+) Length   303 a.a.
NCBI ID   WP_220072430.1    Uniprot ID   -
Organism   Shewanella aegiceratis strain FJAT-53532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4042869..4053780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H80_RS17535 (K0H80_17535) - 4043105..4044475 (-) 1371 WP_220072428.1 O-antigen ligase family protein -
  K0H80_RS17540 (K0H80_17540) pilB 4044817..4046526 (+) 1710 WP_220072429.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H80_RS17545 (K0H80_17545) pilC 4046563..4047831 (+) 1269 WP_011867235.1 type II secretion system F family protein Machinery gene
  K0H80_RS17550 (K0H80_17550) pilD 4047869..4048780 (+) 912 WP_220072430.1 A24 family peptidase Machinery gene
  K0H80_RS17555 (K0H80_17555) coaE 4048800..4049405 (+) 606 WP_220072431.1 dephospho-CoA kinase -
  K0H80_RS17560 (K0H80_17560) zapD 4049414..4050148 (+) 735 WP_144202495.1 cell division protein ZapD -
  K0H80_RS17565 (K0H80_17565) yacG 4050197..4050409 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0H80_RS17570 (K0H80_17570) mutT 4050410..4050799 (+) 390 WP_011867240.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33665.03 Da        Isoelectric Point: 7.2950

>NTDB_id=592724 K0H80_RS17550 WP_220072430.1 4047869..4048780(+) (pilD) [Shewanella aegiceratis strain FJAT-53532]
MTEFIQLMAQYPLLFAAITFAFAAVIGSFLNVVIHRLPVMMKREWQLECNQYLDEYHNATVAEIKDKLAQPIDEYPEKYN
LVVPGSACPKCKTSIKPWHNLPVLGWLMLGGKCAHCKTRISARYPVIEALTGLAIAYLAYHFGPTWQFVFATILTFGLVA
LTGIDLDEMLLPDQITLPLLWIGLLINLNGTFVSITDAVIGASAGYMSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSIVGALVGLLLIVNKKINSGNPIPFGPYIALAGWIAMIWGEKIVNWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=592724 K0H80_RS17550 WP_220072430.1 4047869..4048780(+) (pilD) [Shewanella aegiceratis strain FJAT-53532]
ATGACTGAATTTATTCAATTAATGGCTCAGTACCCTTTGCTGTTTGCCGCAATTACCTTTGCCTTTGCAGCGGTCATAGG
CAGCTTTTTAAACGTGGTGATTCATCGCCTTCCCGTGATGATGAAAAGAGAGTGGCAGCTAGAATGTAACCAATATCTCG
ATGAATATCACAACGCAACCGTTGCGGAGATTAAAGATAAATTAGCTCAGCCGATCGATGAGTATCCAGAAAAATACAAT
CTTGTGGTACCGGGCTCTGCCTGCCCAAAATGTAAAACAAGCATAAAGCCTTGGCATAATCTACCAGTATTAGGCTGGTT
GATGCTTGGTGGGAAATGCGCTCATTGTAAAACACGTATCTCAGCAAGATACCCTGTCATAGAAGCCTTAACTGGATTAG
CGATTGCCTATCTGGCCTACCATTTTGGCCCAACGTGGCAATTTGTCTTTGCCACCATCCTGACCTTTGGCCTGGTAGCC
TTAACAGGGATAGATCTCGATGAGATGCTACTGCCCGATCAAATCACTTTGCCACTCTTATGGATTGGCCTACTTATAAA
TCTAAATGGTACCTTTGTCTCGATTACAGATGCGGTCATTGGCGCTTCTGCGGGTTATATGAGCCTTTGGAGCGTGTTCT
GGGGATTCAAAATACTAACCGGCAAGGAGGGTATGGGTTATGGCGACTTTAAACTATTAGCCGTATTCGGCGCCTGGTTT
GGCTGGCAATTATTGCCACTCATCATCCTGTTATCCTCCATTGTTGGCGCACTAGTTGGCTTGCTACTCATCGTCAATAA
GAAGATCAATTCTGGCAACCCCATACCATTTGGCCCTTATATCGCCTTGGCAGGTTGGATAGCCATGATTTGGGGTGAGA
AAATCGTAAACTGGTACCTATCTACCTTATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-142)

Type IV leader peptidase family (Peptidase_A24)

(154-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.333

99.01

0.498
  pilD Vibrio campbellii strain DS40M4

49

99.01

0.485
  pilD Acinetobacter baumannii D1279779

49.091

90.759

0.446
  pilD Acinetobacter nosocomialis M2

49.091

90.759

0.446
  pilD Neisseria gonorrhoeae MS11

43.416

92.739

0.403