Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H79_RS01910 Genome accession   NZ_CP080415
Coordinates   418477..419736 (-) Length   419 a.a.
NCBI ID   WP_220077120.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-52076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413477..424736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H79_RS01885 (K0H79_01885) mutT 415457..415852 (-) 396 WP_220077115.1 8-oxo-dGTP diphosphatase MutT -
  K0H79_RS01890 (K0H79_01890) yacG 415894..416109 (-) 216 WP_220077116.1 DNA gyrase inhibitor YacG -
  K0H79_RS01895 (K0H79_01895) zapD 416172..416906 (-) 735 WP_220077117.1 cell division protein ZapD -
  K0H79_RS01900 (K0H79_01900) coaE 416899..417516 (-) 618 WP_220077118.1 dephospho-CoA kinase -
  K0H79_RS01905 (K0H79_01905) pilD 417516..418430 (-) 915 WP_220077119.1 A24 family peptidase Machinery gene
  K0H79_RS01910 (K0H79_01910) pilC 418477..419736 (-) 1260 WP_220077120.1 type II secretion system F family protein Machinery gene
  K0H79_RS01915 (K0H79_01915) pilB 419895..421601 (-) 1707 WP_220077121.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H79_RS01920 (K0H79_01920) - 421656..422156 (-) 501 WP_220077122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H79_RS01925 (K0H79_01925) nadC 423749..424606 (-) 858 WP_220077123.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45968.26 Da        Isoelectric Point: 10.0495

>NTDB_id=592681 K0H79_RS01910 WP_220077120.1 418477..419736(-) (pilC) [Shewanella sp. FJAT-52076]
MATAVANKSKKQPQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTILKNQGINPKVVRKKSEGLFGSGNKKIKAMD
IAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
TVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFSSFGAELPAFTQMIINISRFLQSSWYF
FLTAIVVSIWLYVRAHRNSQAVRDRQDELVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=592681 K0H79_RS01910 WP_220077120.1 418477..419736(-) (pilC) [Shewanella sp. FJAT-52076]
ATGGCAACGGCCGTCGCAAACAAGTCAAAAAAGCAGCCACAAAAGCTGGCCCCCAAGGTATATAACTTTGAATGGAAGGG
CTTAAACCGCGATGGTAAAAAATCCAGTGGTGAGCTCAGGGGGGCATCTGTTGCCGAAATTAAAACTATTCTTAAAAATC
AAGGAATAAACCCCAAGGTCGTTCGTAAGAAGTCTGAAGGTTTGTTCGGCAGCGGCAATAAAAAGATTAAAGCTATGGAC
ATTGCCATGGTCACCCGTCAAATCGCCACCATGCTGATGGCAGGCGTGCCATTGGTGACCACCATAGAAATCCTGGGTAA
GGGTCATGAAAAGCCCAAGATGAGGGAATTGCTGGGCACCATTCTCAATGATATTCAGGCGGGTATTCCTCTCTCTGATG
CGCTGCGACCCCACAGAATTTACTTTGATGACTTGTATGTTGACTTGGTTGCCGCAGGTGAGCACTCGGGTTCTCTCGAT
ACTGTGTTTGACAGGATCGCTACTTATAGAGAAAAAGCCGAAGCACTTAAGTCAAAAATTAAGAAAGCCATGTTCTACCC
AGCTGCGGTTGTGGTGGTCGCTATTGCTGTTACCACCTTGCTGCTGCTATTTGTTGTGCCCCAGTTTGAAGAAATCTTTT
CTAGCTTTGGTGCCGAGCTTCCGGCTTTCACGCAGATGATTATCAACATTTCCAGATTTCTACAGTCATCTTGGTATTTC
TTCCTAACCGCTATCGTCGTATCGATCTGGCTCTATGTCAGGGCACATAGAAACTCCCAGGCGGTGAGAGACCGGCAAGA
TGAACTTGTGCTTAAAATCCCTGTGATTGGAGAAATTTTACACAAAGCAGCCATGGCACGTTTTGCAAGAACTTTAGCGA
CCACCTTCGCTGCCGGTGTGCCCCTGATTGATGGCTTGGAGTCTGCTGCGGGCGCTTCTGGTAATGCTGTATACCGTAAA
GCACTTCTACGAATTCGCACCGAAGTGATGGCAGGTATGCAAATGAACGTGGCCATGCGTACCGTTAATCTCTTCCCGGA
TATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCAGGTTCGCTCGATAATATGCTCAATAAAATTGCCAATATCTATG
AGATGCAGGTGGATGATGCAGTGGATGGCCTTTCAAGCCTGATTGAACCCATTATGATGGTGGTCATCGGTACTTTGGTA
GGCGGCTTGATTGTGGGTATGTATCTGCCTATCTTCCAGATGGGTAACGTAGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

94.511

0.532
  pilC Acinetobacter baumannii D1279779

51.122

95.704

0.489
  pilC Acinetobacter baylyi ADP1

51.637

94.749

0.489
  pilC Legionella pneumophila strain ERS1305867

49.505

96.42

0.477
  pilC Vibrio cholerae strain A1552

46.482

94.988

0.442
  pilC Vibrio campbellii strain DS40M4

44.472

97.136

0.432
  pilG Neisseria meningitidis 44/76-A

42.643

95.704

0.408
  pilG Neisseria gonorrhoeae MS11

42.643

95.704

0.408