Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0H79_RS01905 Genome accession   NZ_CP080415
Coordinates   417516..418430 (-) Length   304 a.a.
NCBI ID   WP_220077119.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-52076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412516..423430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H79_RS01885 (K0H79_01885) mutT 415457..415852 (-) 396 WP_220077115.1 8-oxo-dGTP diphosphatase MutT -
  K0H79_RS01890 (K0H79_01890) yacG 415894..416109 (-) 216 WP_220077116.1 DNA gyrase inhibitor YacG -
  K0H79_RS01895 (K0H79_01895) zapD 416172..416906 (-) 735 WP_220077117.1 cell division protein ZapD -
  K0H79_RS01900 (K0H79_01900) coaE 416899..417516 (-) 618 WP_220077118.1 dephospho-CoA kinase -
  K0H79_RS01905 (K0H79_01905) pilD 417516..418430 (-) 915 WP_220077119.1 A24 family peptidase Machinery gene
  K0H79_RS01910 (K0H79_01910) pilC 418477..419736 (-) 1260 WP_220077120.1 type II secretion system F family protein Machinery gene
  K0H79_RS01915 (K0H79_01915) pilB 419895..421601 (-) 1707 WP_220077121.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H79_RS01920 (K0H79_01920) - 421656..422156 (-) 501 WP_220077122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34189.66 Da        Isoelectric Point: 7.9606

>NTDB_id=592680 K0H79_RS01905 WP_220077119.1 417516..418430(-) (pilD) [Shewanella sp. FJAT-52076]
MTEFIALMSQYPWLFILLAFLFSATIGSFLNVVIHRLPVMMKREWQQECNAYLEEYQPELFKKIGKANLYKPIDCYPKRY
NLVIPGSSCPKCGTHIKPWHNLPVMGWIILGGKCAACKARISSRYPIVEAFTGLTVATLAWHFGPTWQFVATALLTFGLI
AMSGIDLDEMLLPDSLTLPLLWLGLLLNYHDLFTNLEDALIGAAAGYLSLWSVYWLFKLTTGKEGMGYGDFKLMALFGAW
LGWQVLPLIILLSSLVGAVVGILMMVWKSHKRENPIPFGPYIAAAGWIALLWGQDIVSWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=592680 K0H79_RS01905 WP_220077119.1 417516..418430(-) (pilD) [Shewanella sp. FJAT-52076]
ATGACAGAATTTATCGCCCTAATGAGCCAGTACCCCTGGCTCTTTATTTTACTCGCATTCCTGTTCTCCGCCACCATTGG
CAGCTTCCTCAATGTGGTAATTCATCGTTTACCTGTGATGATGAAAAGAGAGTGGCAACAGGAATGTAATGCTTATCTCG
AAGAGTACCAACCTGAGCTTTTCAAAAAGATTGGCAAAGCGAATTTGTATAAACCCATTGATTGCTATCCGAAGCGTTAC
AACCTGGTTATTCCGGGTTCATCCTGCCCTAAATGTGGTACTCACATTAAACCTTGGCACAATCTGCCGGTAATGGGCTG
GATAATCCTTGGCGGTAAATGTGCGGCCTGCAAAGCCCGGATTTCCAGCCGTTACCCTATAGTTGAAGCCTTTACCGGCC
TGACTGTTGCAACGCTGGCGTGGCACTTCGGCCCGACTTGGCAATTTGTGGCAACTGCATTACTGACCTTCGGCTTGATT
GCCATGTCGGGTATTGACCTCGATGAAATGCTGCTGCCAGACAGCCTCACTCTTCCATTACTGTGGCTTGGATTGCTGCT
TAACTATCACGATTTATTTACTAACCTGGAAGATGCATTGATAGGTGCTGCTGCCGGTTATCTGTCACTTTGGTCTGTCT
ATTGGCTGTTTAAGCTCACAACAGGCAAAGAAGGCATGGGCTACGGTGATTTTAAACTCATGGCGCTCTTTGGCGCCTGG
CTCGGCTGGCAGGTGCTGCCATTGATTATTCTTCTCTCAAGCTTGGTCGGTGCCGTCGTCGGCATCCTGATGATGGTTTG
GAAAAGCCATAAGCGTGAAAATCCAATCCCATTCGGTCCCTATATCGCGGCCGCTGGCTGGATAGCACTGCTTTGGGGAC
AAGATATCGTCAGCTGGTATCTGGGTACTCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50

97.368

0.487
  pilD Vibrio campbellii strain DS40M4

49.831

97.039

0.484
  pilD Acinetobacter baumannii D1279779

46.358

99.342

0.461
  pilD Acinetobacter nosocomialis M2

45.695

99.342

0.454
  pilD Neisseria gonorrhoeae MS11

42.361

94.737

0.401