Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H63_RS01975 Genome accession   NZ_CP080414
Coordinates   437339..438598 (-) Length   419 a.a.
NCBI ID   WP_220066484.1    Uniprot ID   -
Organism   Shewanella zhangzhouensis strain FJAT-52072     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432339..443598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H63_RS01950 (K0H63_01950) mutT 434319..434714 (-) 396 WP_220066479.1 8-oxo-dGTP diphosphatase MutT -
  K0H63_RS01955 (K0H63_01955) yacG 434756..434971 (-) 216 WP_220066480.1 DNA gyrase inhibitor YacG -
  K0H63_RS01960 (K0H63_01960) zapD 435034..435768 (-) 735 WP_220066481.1 cell division protein ZapD -
  K0H63_RS01965 (K0H63_01965) coaE 435761..436378 (-) 618 WP_220066482.1 dephospho-CoA kinase -
  K0H63_RS01970 (K0H63_01970) pilD 436378..437292 (-) 915 WP_220066483.1 A24 family peptidase Machinery gene
  K0H63_RS01975 (K0H63_01975) pilC 437339..438598 (-) 1260 WP_220066484.1 type II secretion system F family protein Machinery gene
  K0H63_RS01980 (K0H63_01980) pilB 438757..440463 (-) 1707 WP_220066485.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H63_RS20180 (K0H63_01985) - 440475..440912 (-) 438 WP_220066486.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H63_RS01990 (K0H63_01990) nadC 442553..443410 (-) 858 WP_220066487.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45852.17 Da        Isoelectric Point: 10.0395

>NTDB_id=592659 K0H63_RS01975 WP_220066484.1 437339..438598(-) (pilC) [Shewanella zhangzhouensis strain FJAT-52072]
MATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTILKNQGINPKVVRKKSDGLFGASNKKINAMD
IAMITRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
TVFDRIAIYKEKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFESIFASFGAELPGFTQLIVNISRFLQSSWYI
FLIVIVSSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLKIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=592659 K0H63_RS01975 WP_220066484.1 437339..438598(-) (pilC) [Shewanella zhangzhouensis strain FJAT-52072]
ATGGCAACGGCCGTCGCAAACAAATCCAAAAAGCAGACACAAAAGCTGGCACCCAAGGTCTATAACTTTGAATGGAAGGG
CTTAAACCGCGATGGAAAAAAATCCAGTGGCGAGCTCAGGGGCGCATCTGTCGCCGAGATTAAAACCATTCTTAAAAATC
AAGGAATAAACCCCAAGGTCGTCCGTAAAAAGTCTGATGGCCTCTTTGGTGCCAGCAATAAAAAGATCAATGCGATGGAC
ATCGCCATGATCACCCGCCAAATTGCCACCATGCTGATGGCGGGCGTGCCCTTGGTCACTACCATAGAAATCCTCGGTAA
AGGCCATGAAAAGCCCAAGATGAGAGAATTGCTTGGCACCATTCTTAATGACATTCAGGCGGGTATTCCGCTCTCTGACG
CCCTTCGTCCCCACAGAATATATTTCGATGATTTATACGTCGACCTGGTGGCAGCCGGTGAGCACTCGGGCTCACTGGAT
ACCGTATTTGACCGCATCGCGATTTATAAAGAGAAAGCCGAAGCGCTTAAGTCCAAAATCAAAAAGGCCATGTTCTACCC
AGCTGCGGTTGTGGTGGTGGCTATTGCCGTTACTACCTTGCTGCTGCTCTTTGTGGTGCCGCAGTTTGAAAGCATTTTTG
CCAGCTTTGGTGCTGAACTGCCAGGCTTTACCCAATTGATAGTTAACATTTCAAGATTCTTGCAGTCTTCTTGGTACATC
TTTTTAATTGTGATTGTAAGCTCTATATGGCTGTATGTTCGCGCACACAGAAACTCCCAGGCGGTGAGAGACAGGCAAGA
CGAATTTGTGCTTAAAATCCCCGTGATTGGTGAAATTTTACACAAGGCCGCCATGGCCCGATTTGCCCGCACACTGGCGA
CCACCTTTGCTGCGGGTGTGCCTTTAATTGATGGCCTGGAGTCCGCTGCAGGTGCTTCTGGTAACGCTGTATACCGTAAA
GCCCTGCTTAAAATTCGCACCGAAGTGATGGCAGGTATGCAAATGAACGTGGCCATGCGCACCGTAAATCTCTTCCCGGA
TATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCAGGTTCGCTCGATAATATGCTCAACAAAATTGCCAATATCTATG
AGATGCAGGTGGATGATGCAGTGGATGGCCTTTCTAGCCTGATTGAACCCATTATGATGGTGGTTATCGGCACCCTCGTG
GGCGGCCTGATTGTGGGTATGTATCTGCCTATCTTCCAGATGGGTAACGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Acinetobacter baylyi ADP1

52.393

94.749

0.496
  pilC Acinetobacter baumannii D1279779

51.508

94.988

0.489
  pilC Legionella pneumophila strain ERS1305867

49.505

96.42

0.477
  pilC Vibrio cholerae strain A1552

45.366

97.852

0.444
  pilC Vibrio campbellii strain DS40M4

43.341

98.568

0.427
  pilG Neisseria gonorrhoeae MS11

43.142

95.704

0.413
  pilG Neisseria meningitidis 44/76-A

42.893

95.704

0.411