Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0H63_RS01970 Genome accession   NZ_CP080414
Coordinates   436378..437292 (-) Length   304 a.a.
NCBI ID   WP_220066483.1    Uniprot ID   -
Organism   Shewanella zhangzhouensis strain FJAT-52072     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431378..442292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H63_RS01950 (K0H63_01950) mutT 434319..434714 (-) 396 WP_220066479.1 8-oxo-dGTP diphosphatase MutT -
  K0H63_RS01955 (K0H63_01955) yacG 434756..434971 (-) 216 WP_220066480.1 DNA gyrase inhibitor YacG -
  K0H63_RS01960 (K0H63_01960) zapD 435034..435768 (-) 735 WP_220066481.1 cell division protein ZapD -
  K0H63_RS01965 (K0H63_01965) coaE 435761..436378 (-) 618 WP_220066482.1 dephospho-CoA kinase -
  K0H63_RS01970 (K0H63_01970) pilD 436378..437292 (-) 915 WP_220066483.1 A24 family peptidase Machinery gene
  K0H63_RS01975 (K0H63_01975) pilC 437339..438598 (-) 1260 WP_220066484.1 type II secretion system F family protein Machinery gene
  K0H63_RS01980 (K0H63_01980) pilB 438757..440463 (-) 1707 WP_220066485.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H63_RS20180 (K0H63_01985) - 440475..440912 (-) 438 WP_220066486.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34022.34 Da        Isoelectric Point: 6.9388

>NTDB_id=592658 K0H63_RS01970 WP_220066483.1 436378..437292(-) (pilD) [Shewanella zhangzhouensis strain FJAT-52072]
MTEFIALLSQYSWLFILLAFLFSATIGSFLNVVIHRLPVMMKREWQQECNAYLEEYQPELFKKIGKANLDKPIDSYPESY
NLIVPGSSCPKCGTHIKPWHNLPVMGWIILGGKCAACKARISSRYPIVEAFTGLTVATLAWHFGPTWQFVATALLTFGLI
AMSGIDLDEMLLPDSLTLPLLWLGLLLNYQGLFTNLEDALIGAVAGYLSLWSVYWLFKLTTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGAVVGILMMVWKSHKRENPIPFGPYIAAAGWIALLWGQDIVSWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=592658 K0H63_RS01970 WP_220066483.1 436378..437292(-) (pilD) [Shewanella zhangzhouensis strain FJAT-52072]
ATGACTGAATTTATCGCCCTATTGAGCCAGTACTCCTGGCTCTTTATTTTGCTCGCATTCCTCTTCTCAGCCACCATTGG
CAGTTTCCTCAATGTGGTAATCCATCGTTTGCCGGTGATGATGAAAAGAGAGTGGCAGCAGGAATGTAATGCTTATCTTG
AAGAGTACCAGCCAGAGCTTTTCAAAAAGATTGGCAAAGCGAATTTAGACAAACCCATTGATAGCTATCCGGAGAGTTAC
AACCTGATTGTTCCAGGTTCATCCTGCCCTAAATGTGGTACTCATATTAAACCCTGGCACAATCTGCCGGTAATGGGCTG
GATAATCCTTGGCGGTAAATGTGCCGCATGCAAAGCCCGGATTTCCAGCCGCTACCCTATAGTGGAAGCCTTTACCGGCC
TGACCGTTGCAACGCTGGCGTGGCACTTCGGCCCGACTTGGCAATTTGTGGCAACTGCATTACTGACCTTTGGCTTAATT
GCCATGTCGGGTATCGACCTAGATGAAATGTTGCTGCCAGACAGCCTCACTCTTCCGCTGCTGTGGCTTGGATTGCTGCT
TAACTATCAGGGTTTATTTACCAATCTGGAAGATGCGCTTATAGGTGCTGTTGCCGGTTATCTGTCGCTTTGGTCTGTCT
ATTGGCTGTTTAAGCTCACCACAGGCAAAGAAGGCATGGGCTACGGTGATTTTAAACTCATGGCGCTCTTTGGCGCCTGG
CTCGGCTGGCAGATGCTGCCATTGATTATTCTTCTCTCAAGCCTGGTTGGTGCTGTCGTTGGCATCCTGATGATGGTTTG
GAAAAGCCATAAGCGTGAAAATCCAATTCCATTCGGCCCCTATATCGCGGCCGCTGGCTGGATAGCACTGCTTTGGGGAC
AAGATATCGTCAGCTGGTATCTGGGTACTCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)

Type IV leader peptidase family (Peptidase_A24)

(154-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.505

97.697

0.493
  pilD Vibrio campbellii strain DS40M4

50.169

97.039

0.487
  pilD Acinetobacter baumannii D1279779

47.351

99.342

0.47
  pilD Acinetobacter nosocomialis M2

47.02

99.342

0.467
  pilD Neisseria gonorrhoeae MS11

42.617

98.026

0.418