Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H61_RS01585 Genome accession   NZ_CP080413
Coordinates   343246..344511 (-) Length   421 a.a.
NCBI ID   WP_220051030.1    Uniprot ID   -
Organism   Shewanella acanthi strain FJAT-51860     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338246..349511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H61_RS01555 (K0H61_01555) - 339216..339752 (-) 537 WP_220051025.1 thioredoxin family protein -
  K0H61_RS01560 (K0H61_01560) mutT 339908..340303 (-) 396 WP_220051026.1 8-oxo-dGTP diphosphatase MutT -
  K0H61_RS01565 (K0H61_01565) yacG 340405..340614 (-) 210 WP_011621218.1 DNA gyrase inhibitor YacG -
  K0H61_RS01570 (K0H61_01570) zapD 340736..341470 (-) 735 WP_220051027.1 cell division protein ZapD -
  K0H61_RS01575 (K0H61_01575) coaE 341463..342080 (-) 618 WP_220051028.1 dephospho-CoA kinase -
  K0H61_RS01580 (K0H61_01580) pilD 342139..343074 (-) 936 WP_220051029.1 A24 family peptidase Machinery gene
  K0H61_RS01585 (K0H61_01585) pilC 343246..344511 (-) 1266 WP_220051030.1 type II secretion system F family protein Machinery gene
  K0H61_RS01590 (K0H61_01590) pilB 344593..346302 (-) 1710 WP_220051031.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H61_RS01595 (K0H61_01595) - 346360..346851 (-) 492 WP_286670284.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H61_RS01600 (K0H61_01600) nadC 347958..348839 (-) 882 WP_220051032.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46159.26 Da        Isoelectric Point: 10.0426

>NTDB_id=592639 K0H61_RS01585 WP_220051030.1 343246..344511(-) (pilC) [Shewanella acanthi strain FJAT-51860]
MATATSARKSRNGRTEQKAPPKIYTFEWKGLNRDGQKTGGELKGATVAEVKSQLKSQGVNPKTVRKKAAPFFSRNPDIKP
MDIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGGILSEVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFASFGAELPAFTQLIIGISRFLQSSW
YFFFAGIVIAIWLFVRAHRNSQTFRDRIDEMVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
KKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=592639 K0H61_RS01585 WP_220051030.1 343246..344511(-) (pilC) [Shewanella acanthi strain FJAT-51860]
ATGGCAACCGCAACTAGCGCAAGAAAGTCGCGCAATGGCCGAACTGAACAAAAAGCTCCACCTAAGATTTATACTTTCGA
ATGGAAAGGCCTAAACCGCGATGGCCAAAAAACCGGTGGTGAGCTTAAGGGCGCTACTGTTGCCGAGGTAAAAAGCCAGC
TTAAATCCCAGGGCGTAAACCCTAAAACAGTACGCAAAAAAGCGGCACCTTTTTTTTCTCGAAATCCCGATATTAAACCC
ATGGATATCGCCATGGTCACTCGCCAGATAGCGACCATGCTGGCCGCAGGTGTGCCTTTAGTCACCACAATCGAAATGCT
TGGCCGTGGCCATGAAAAACAAAAAATGCGAGAACTATTAGGGGGTATTCTTTCTGAGGTGCAATCGGGTATCCCCTTAT
CCGATGCGCTGCGCCCCCATAGGCGCTATTTCGATGATCTCTATGTCGACTTAGTGGCTGCGGGTGAACACTCAGGCTCC
CTCGATGCAGTATTCGATCGTATTGCCACCTACAGAGAAAAAGCAGAGGCACTAAAATCAAAAATCAAAAAAGCGATGTT
TTATCCTGCTGCGGTAGTAGTAGTCGCTATTCTGGTAACTACGCTTCTATTGCTCTTTGTTGTTCCTCAATTTGAAGAGA
TTTTTGCAAGTTTTGGCGCAGAACTGCCCGCCTTTACCCAGCTCATTATCGGTATTTCACGCTTTTTACAAAGTTCTTGG
TACTTTTTCTTTGCAGGCATTGTAATTGCTATTTGGTTATTTGTTCGCGCCCATCGTAATTCGCAAACTTTTAGAGACAG
AATCGATGAAATGGTGCTAAAAATACCTGTAATTGGTGAGATTTTACATAAAGCCGCGATGGCGCGTTTCTCTCGCACCC
TAGCCACTACCTTTGCCGCCGGTGTGCCTTTGATTGATGGTATGGAGTCAGCCGCTGGCGCTTCCGGTAACGCCGTATAT
AAAAAAGCCCTATTAAAAGTACGCCAGGAAGTGATGGCGGGGATGCAGATGAACGTCGCTATGCGCACCACTGGGCTGTT
CCCCGATATGCTAATCCAAATGGTGATGATTGGTGAAGAATCGGGTTCGCTTGATAATATGCTCAATAAAGTTGCCAATA
TCTACGAGATGCAGGTAGATGATGCGGTCGATGGTCTTTCTAGCCTAATTGAACCAATAATGATGGTGGTAATTGGCACC
TTAGTTGGCGGTTTGATTGTTGGTATGTATCTGCCTATCTTCCAAATGGGTAATGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.203

93.824

0.527
  pilC Acinetobacter baylyi ADP1

51.637

94.299

0.487
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Vibrio cholerae strain A1552

45.721

97.15

0.444
  pilC Vibrio campbellii strain DS40M4

43.424

95.724

0.416
  pilG Neisseria meningitidis 44/76-A

41.604

94.774

0.394
  pilG Neisseria gonorrhoeae MS11

41.604

94.774

0.394