Detailed information NTG0592638

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K0H61_RS01580
• Genome accession: NZ_CP080413
• Coordinates: 342139..343074 (-)
• Length: 311 a.a.
• NCBI ID: WP_220051029.1
• Uniprot ID: -
• Organism: Shewanella acanthi strain FJAT-51860
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 337139..348074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0H61_RS01550 (K0H61_01550)	-	338203..339129 (+)	927	WP_220051024.1	exopolyphosphatase	-
K0H61_RS01555 (K0H61_01555)	-	339216..339752 (-)	537	WP_220051025.1	thioredoxin family protein	-
K0H61_RS01560 (K0H61_01560)	mutT	339908..340303 (-)	396	WP_220051026.1	8-oxo-dGTP diphosphatase MutT	-
K0H61_RS01565 (K0H61_01565)	yacG	340405..340614 (-)	210	WP_011621218.1	DNA gyrase inhibitor YacG	-
K0H61_RS01570 (K0H61_01570)	zapD	340736..341470 (-)	735	WP_220051027.1	cell division protein ZapD	-
K0H61_RS01575 (K0H61_01575)	coaE	341463..342080 (-)	618	WP_220051028.1	dephospho-CoA kinase	-
K0H61_RS01580 (K0H61_01580)	pilD	342139..343074 (-)	936	WP_220051029.1	A24 family peptidase	Machinery gene
K0H61_RS01585 (K0H61_01585)	pilC	343246..344511 (-)	1266	WP_220051030.1	type II secretion system F family protein	Machinery gene
K0H61_RS01590 (K0H61_01590)	pilB	344593..346302 (-)	1710	WP_220051031.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K0H61_RS01595 (K0H61_01595)	-	346360..346851 (-)	492	WP_286670284.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34736.34 Da
• Isoelectric Point: 7.6842

>NTDB_id=592638 K0H61_RS01580 WP_220051029.1 342139..343074(-) (pilD) [Shewanella acanthi strain FJAT-51860]
MSEFISSLERLPWLFISLSFIFAATIGSFLNVVIHRLPVMMKREWQQECNGYLEEYHADLLTQIRQVGIDTLNKPIDHYP
EKYNLIVPGSACPKCKTAIKPWHNLPMLGWLMLRGKCAACKAPISARYPIIELITGLLVATLAWHFGPSWQFVFTSLLTF
VLVALTGIDLDEMLLPDQLTLPLLWLGLLLNLNQMFTSPTDAIIGAAAGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVF
GAWLGWQMLPLVILLSSLVGAVVGITIIVANRKGMRNQLSNPIPFGPYIAAAGWIAVIWGQPIVDWYLSAI

Nucleotide

• Length: 936 bp

>NTDB_id=592638 K0H61_RS01580 WP_220051029.1 342139..343074(-) (pilD) [Shewanella acanthi strain FJAT-51860]
ATGTCCGAATTTATCTCTAGTCTAGAACGGCTTCCTTGGCTGTTTATAAGTTTAAGCTTTATCTTTGCCGCCACTATTGG
CAGCTTTTTAAATGTAGTGATTCACCGCTTACCCGTGATGATGAAGCGGGAATGGCAGCAGGAATGTAATGGCTATTTGG
AAGAATACCATGCCGATTTACTAACACAAATTCGACAGGTTGGTATCGATACACTCAATAAACCCATTGATCATTACCCT
GAAAAATACAATTTAATTGTGCCAGGTTCTGCCTGTCCAAAGTGTAAAACCGCCATCAAACCATGGCATAACTTGCCGAT
GCTGGGTTGGTTGATGCTTAGGGGCAAATGCGCCGCCTGCAAAGCACCGATTTCTGCACGCTATCCCATTATTGAGTTAA
TCACAGGGCTTTTAGTAGCAACCCTTGCTTGGCATTTTGGCCCAAGCTGGCAGTTTGTCTTTACTAGCCTGCTCACCTTT
GTACTCGTTGCCCTAACAGGTATCGACTTAGATGAAATGCTACTGCCCGATCAACTCACCCTGCCGCTGTTATGGTTAGG
TTTACTTTTAAATCTTAACCAGATGTTCACGAGCCCCACCGATGCCATTATTGGTGCCGCGGCAGGTTATTTAAGCCTCT
GGTCAGTATTTTGGCTATTTAAATTACTCACGGGTAAAGAAGGTATGGGTTATGGCGACTTTAAGCTGCTAGCCGTATTT
GGTGCTTGGCTTGGTTGGCAAATGCTGCCGTTGGTGATTCTACTATCATCCCTAGTTGGGGCTGTTGTGGGTATCACTAT
AATAGTGGCTAATCGTAAGGGTATGCGCAATCAATTGAGTAACCCCATTCCCTTTGGCCCCTATATCGCTGCAGCGGGTT
GGATTGCAGTCATTTGGGGTCAACCCATTGTAGATTGGTATTTAAGTGCTATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-146)

• Type IV leader peptidase family (Peptidase_A24) (158-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52	96.463	0.502
pilD	Vibrio campbellii strain DS40M4	50.82	98.071	0.498
pilD	Acinetobacter nosocomialis M2	48.185	97.428	0.469
pilD	Acinetobacter baumannii D1279779	47.855	97.428	0.466
pilD	Neisseria gonorrhoeae MS11	42.395	99.357	0.421