Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MSA_RS10395 Genome accession   NC_021486
Coordinates   2010261..2011520 (-) Length   419 a.a.
NCBI ID   WP_016481338.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005261..2016520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS10360 (MSA_21430) - 2005413..2006954 (-) 1542 WP_000230040.1 membrane protein -
  MSA_RS11990 (MSA_21440) - 2007000..2007122 (-) 123 WP_001285711.1 hypothetical protein -
  MSA_RS10370 (MSA_21450) - 2007204..2007521 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  MSA_RS10375 (MSA_21460) ruvX 2007547..2007966 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  MSA_RS10380 (MSA_21470) - 2007966..2008232 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  MSA_RS10385 (MSA_21480) spx 2008434..2008832 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  MSA_RS10390 (MSA_21490) recA 2009048..2010187 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  MSA_RS10395 (MSA_21500) cinA 2010261..2011520 (-) 1260 WP_016481338.1 competence/damage-inducible protein A Machinery gene
  MSA_RS10400 (MSA_21510) - 2011609..2012160 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  MSA_RS10405 (MSA_21520) ruvA 2012183..2012773 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA -
  MSA_RS10410 (MSA_21530) - 2012775..2014007 (-) 1233 WP_016481339.1 MFS transporter -
  MSA_RS10415 (MSA_21540) mutL 2014039..2016018 (-) 1980 WP_079269307.1 DNA mismatch repair endonuclease MutL -
  MSA_RS10420 (MSA_21550) - 2016238..2016441 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45343.20 Da        Isoelectric Point: 5.8866

>NTDB_id=59140 MSA_RS10395 WP_016481338.1 2010261..2011520(-) (cinA) [Streptococcus agalactiae ILRI005]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEGRLLSLLDIASQRSQLVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASCPQFARTPNNERQAQLVEGSIPLQNLTGLAVGGIVTSKGVQYMVLPGPPSELKPM
VMEQVVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKVGEVTLRLSTKAENQDEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVISHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRALLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=59140 MSA_RS10395 WP_016481338.1 2010261..2011520(-) (cinA) [Streptococcus agalactiae ILRI005]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATTGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGACAATGAGGGACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGTAGTCAATTGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAGCAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTTGTCC
TCAGTTTGCTAGAACGCCAAATAATGAACGACAAGCTCAATTGGTTGAAGGCTCAATACCTCTACAAAACCTTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAAGCCAATG
GTTATGGAGCAGGTGGTACCTATTTTGTCAAATAATGGCACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATCGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGATCCAACTATAGCACCATATGCAAAGGTTG
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGAAAATCAGGATGAAGCCGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTTAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGTTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGTTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATCCCTAAGAAAAAATTGCAAGAATATGGAGTTATCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAACTTTTAAAAGCAGATTTTGGTATCGGGTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGCGTTTCTTCTATTAAAGTATCGATTGGAGGGAAGAGTCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACTTAGTGCGTAGGGCTTTATTAAAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.223

99.523

0.709
  cinA Streptococcus mitis NCTC 12261

70.983

99.523

0.706
  cinA Streptococcus pneumoniae TIGR4

69.784

99.523

0.695
  cinA Streptococcus pneumoniae Rx1

69.784

99.523

0.695
  cinA Streptococcus pneumoniae R6

69.784

99.523

0.695
  cinA Streptococcus pneumoniae D39

69.544

99.523

0.692
  cinA Streptococcus mutans UA159

67.626

99.523

0.673
  cinA Streptococcus suis isolate S10

54.808

99.284

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

43.062

99.761

0.43

Multiple sequence alignment