Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KYX49_RS15420 Genome accession   NZ_CP079944
Coordinates   3222227..3222967 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 04117201 isolate DstkR-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3217227..3227967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX49_RS15400 (KYX49_15295) aroB 3217764..3218846 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  KYX49_RS15405 (KYX49_15300) aroK 3218875..3219444 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KYX49_RS15410 (KYX49_15305) pilQ 3219456..3221621 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KYX49_RS15415 (KYX49_15310) pilP 3221689..3222216 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KYX49_RS15420 (KYX49_15315) pilO 3222227..3222967 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KYX49_RS15425 (KYX49_15320) pilN 3222964..3223605 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  KYX49_RS15430 (KYX49_15325) pilM 3223605..3224663 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KYX49_RS15435 (KYX49_15330) ponA 3224826..3227381 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=590474 KYX49_RS15420 WP_000076101.1 3222227..3222967(-) (pilO) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=590474 KYX49_RS15420 WP_000076101.1 3222227..3222967(-) (pilO) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683