Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KYX49_RS15290 Genome accession   NZ_CP079944
Coordinates   3194085..3194903 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 04117201 isolate DstkR-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3189085..3199903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX49_RS15275 (KYX49_15170) pilE 3189303..3189728 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KYX49_RS15280 (KYX49_15175) pilY2 3189725..3190207 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KYX49_RS15285 (KYX49_15180) - 3190220..3194073 (-) 3854 Protein_2979 PilC/PilY family type IV pilus protein -
  KYX49_RS15290 (KYX49_15185) pilX 3194085..3194903 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KYX49_RS15295 (KYX49_15190) pilW 3194900..3195901 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  KYX49_RS15300 (KYX49_15195) pilV 3195902..3196462 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KYX49_RS15305 (KYX49_15200) fimU 3196456..3196929 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  KYX49_RS15310 (KYX49_15205) ispH 3197099..3198049 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KYX49_RS15315 (KYX49_15210) gmk 3198172..3198801 (+) 630 WP_000015937.1 guanylate kinase -
  KYX49_RS15320 (KYX49_15215) rpoZ 3198874..3199152 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KYX49_RS15325 (KYX49_15220) - 3199191..3199320 (+) 130 Protein_2987 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=590467 KYX49_RS15290 WP_000149374.1 3194085..3194903(-) (pilX) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=590467 KYX49_RS15290 WP_000149374.1 3194085..3194903(-) (pilX) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993