Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   KZH42_RS04270 Genome accession   NZ_CP079941
Coordinates   851833..852831 (-) Length   332 a.a.
NCBI ID   WP_002219588.1    Uniprot ID   -
Organism   Neisseria meningitidis strain C311     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 846833..857831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS04245 (KZH42_04245) - 848210..848836 (-) 627 WP_002225494.1 phosphoribosylanthranilate isomerase -
  KZH42_RS04250 (KZH42_04250) greB 848895..849386 (-) 492 WP_002225493.1 transcription elongation factor GreB -
  KZH42_RS04255 (KZH42_04255) purF 849486..851030 (-) 1545 WP_002225492.1 amidophosphoribosyltransferase -
  KZH42_RS11960 - 851176..851307 (-) 132 WP_256824360.1 hypothetical protein -
  KZH42_RS04265 (KZH42_04265) - 851343..851840 (-) 498 WP_002225491.1 CvpA family protein -
  KZH42_RS04270 (KZH42_04270) tpc 851833..852831 (-) 999 WP_002219588.1 cell division protein FtsN Machinery gene
  KZH42_RS04275 (KZH42_04275) folC 852844..854118 (-) 1275 WP_002225490.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  KZH42_RS04280 (KZH42_04280) - 854149..854595 (-) 447 WP_002225489.1 protein YgfX -
  KZH42_RS04285 (KZH42_04285) - 854600..854959 (-) 360 WP_002225487.1 hypothetical protein -
  KZH42_RS04290 (KZH42_04290) - 855032..855760 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  KZH42_RS04295 (KZH42_04295) rsmA 855933..856712 (-) 780 WP_002225484.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  KZH42_RS04300 (KZH42_04300) - 856909..857598 (+) 690 WP_002225483.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35534.92 Da        Isoelectric Point: 10.1759

>NTDB_id=590366 KZH42_RS04270 WP_002219588.1 851833..852831(-) (tpc) [Neisseria meningitidis strain C311]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINERLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=590366 KZH42_RS04270 WP_002219588.1 851833..852831(-) (tpc) [Neisseria meningitidis strain C311]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGAGCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAG

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934