Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   KX728_RS09270 Genome accession   NZ_CP079724
Coordinates   1918228..1919421 (+) Length   397 a.a.
NCBI ID   WP_215804198.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1913228..1924421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS09230 (KX728_09225) - 1914290..1914832 (+) 543 WP_215804202.1 TetR/AcrR family transcriptional regulator -
  KX728_RS09245 (KX728_09240) comE 1915067..1915819 (-) 753 WP_215804201.1 LytTR family DNA-binding domain-containing protein Regulator
  KX728_RS09250 (KX728_09245) comD 1915816..1917135 (-) 1320 WP_215804200.1 GHKL domain-containing protein Regulator
  KX728_RS09255 (KX728_09250) comC/comC2 1917156..1917281 (-) 126 WP_215804199.1 competence-stimulating peptide ComC Regulator
  KX728_RS09265 (KX728_09260) rlmH 1917563..1918042 (-) 480 WP_000694219.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  KX728_RS09270 (KX728_09265) htrA 1918228..1919421 (+) 1194 WP_215804198.1 S1C family serine protease Regulator
  KX728_RS09275 (KX728_09270) spo0J 1919479..1920237 (+) 759 WP_125413781.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 41968.82 Da        Isoelectric Point: 6.6581

>NTDB_id=589013 KX728_RS09270 WP_215804198.1 1918228..1919421(+) (htrA) [Streptococcus oralis strain 34]
MKHLQKFYKKVVKVLVIILIGFLSGALGSFVTLQLYQKQGNQATNNNSGTVTQTSYKNENSTTQAVNKVKDAVVSIITYS
SSSRQSSVFNGDETNSDSDNQQIASEGSGVIYKKDDKDAYLVTNTHVINGASKVDIRLADGTKVPGEIVGSDTFSDIAVV
KISSEKVTTVAEFGDSSQLSVGETAIAIGSPLGSEYANTVTQGIISSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGG
PLVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDAQNIIKQLESNGKVTRPALGIQMVNLSNVGASDLRKLNIPSGLT
SGVVVRSVQNNMPANGHLQKYDVITKVDDKEIASSTDLQHALYNHAIGDTIKVTYYRNGKEETTSIKLDKNSSDLES

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=589013 KX728_RS09270 WP_215804198.1 1918228..1919421(+) (htrA) [Streptococcus oralis strain 34]
ATGAAACACTTACAAAAATTTTACAAAAAGGTAGTTAAAGTTCTTGTAATCATTCTAATCGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACAAATAATAATTCTGGCACTGTCACTCAAA
CATCCTATAAGAATGAAAATTCAACCACTCAAGCAGTAAATAAAGTTAAGGATGCTGTTGTCTCAATCATTACTTATTCT
TCTAGCAGTAGACAAAGCAGTGTATTTAATGGTGATGAAACTAATTCTGATTCAGACAATCAACAAATCGCGAGTGAGGG
ATCAGGTGTTATCTATAAAAAAGATGATAAAGATGCCTATCTTGTAACTAATACTCACGTTATCAATGGAGCTTCAAAAG
TTGATATTCGCTTGGCAGATGGTACCAAGGTTCCTGGTGAAATTGTCGGATCTGATACTTTCTCTGATATTGCTGTCGTT
AAAATTTCTTCAGAAAAAGTTACAACAGTGGCAGAATTTGGAGATTCAAGTCAACTTAGTGTTGGAGAAACAGCGATTGC
TATCGGTAGTCCTTTAGGTTCAGAATATGCTAATACAGTTACACAGGGGATTATTTCAAGTCTTAATCGAAATGTTTCTC
TAAAATCTGAAGATGGTCAAGCTATTTCAACAAAAGCCATTCAAACAGATACAGCCATTAACCCTGGTAACTCTGGTGGT
CCACTTGTAAATATTCAAGGACAAGTAATTGGTATTACATCAAGTAAAATTGCAAGTAATGGTGGAACATCTGTAGAAGG
TCTTGGTTTTGCAATTCCTTCAAACGATGCACAAAATATCATTAAACAGCTTGAAAGTAATGGTAAAGTGACTCGTCCAG
CTCTTGGAATTCAAATGGTCAATCTGTCAAATGTTGGAGCTAGTGATCTTAGAAAACTTAACATTCCAAGTGGCCTCACT
TCAGGTGTAGTTGTTCGATCTGTTCAAAACAATATGCCAGCAAATGGACACCTTCAAAAATACGATGTCATTACCAAAGT
TGACGACAAAGAGATTGCCTCATCAACAGACCTACAACATGCTCTTTACAATCATGCTATTGGAGATACTATCAAAGTAA
CCTACTACCGTAACGGTAAGGAGGAAACAACCTCAATTAAACTAGATAAGAATTCTAGTGATTTAGAGTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.627

100

0.836

  htrA Streptococcus pneumoniae Rx1

83.123

100

0.831

  htrA Streptococcus pneumoniae D39

83.123

100

0.831

  htrA Streptococcus pneumoniae R6

83.123

100

0.831

  htrA Streptococcus pneumoniae TIGR4

83.123

100

0.831

  htrA Streptococcus gordonii str. Challis substr. CH1

66.833

100

0.675

  htrA Streptococcus mutans UA159

54.75

100

0.552