Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KXJ79_RS03910 Genome accession   NZ_CP079716
Coordinates   898010..899227 (-) Length   405 a.a.
NCBI ID   WP_122322325.1    Uniprot ID   A0A3M5J9T5
Organism   Pseudomonas amygdali strain HS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893010..904227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ79_RS03870 (KXJ79_03870) - 893080..894378 (-) 1299 WP_219170935.1 NAD(P)/FAD-dependent oxidoreductase -
  KXJ79_RS26120 - 894475..894711 (-) 237 WP_306824540.1 DUF3094 family protein -
  KXJ79_RS03880 (KXJ79_03880) - 894596..895129 (-) 534 WP_122259820.1 MOSC domain-containing protein -
  KXJ79_RS03885 (KXJ79_03885) - 895126..895755 (-) 630 WP_219170936.1 DUF1780 domain-containing protein -
  KXJ79_RS03890 (KXJ79_03890) - 895840..896112 (+) 273 Protein_766 hypothetical protein -
  KXJ79_RS03895 (KXJ79_03895) yacG 896310..896519 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  KXJ79_RS03900 (KXJ79_03900) coaE 896516..897139 (-) 624 WP_219170938.1 dephospho-CoA kinase -
  KXJ79_RS03905 (KXJ79_03905) pilD 897136..898008 (-) 873 WP_219170939.1 A24 family peptidase Machinery gene
  KXJ79_RS03910 (KXJ79_03910) pilC 898010..899227 (-) 1218 WP_122322325.1 type II secretion system F family protein Machinery gene
  KXJ79_RS03915 (KXJ79_03915) pilB 899230..900924 (-) 1695 WP_122322326.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KXJ79_RS26400 (KXJ79_03920) pilA2 901149..901565 (+) 417 WP_122322339.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KXJ79_RS03925 (KXJ79_03925) - 901727..903148 (+) 1422 WP_371875225.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44038.84 Da        Isoelectric Point: 10.0247

>NTDB_id=588827 KXJ79_RS03910 WP_122322325.1 898010..899227(-) (pilC) [Pseudomonas amygdali strain HS1]
MASKAVKVTVYSWEGVDKKGTKISGELSGHNLALVKAQLRKQGINPTKVRKKSVSLFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIIEGSENPNMQALVNSLKQEVSAGNSFAAALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPAAVLIVAIIVSGILLIKVVPQFQSVFTGFGAELPGFTLMVIGLSEIVQQWWLGLVGLFFVGFFIFK
KAYKQSQKFRDSMDRFLLKTPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRHAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGSAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=588827 KXJ79_RS03910 WP_122322325.1 898010..899227(-) (pilC) [Pseudomonas amygdali strain HS1]
ATGGCCAGCAAGGCAGTTAAAGTCACCGTTTACAGCTGGGAAGGTGTCGATAAAAAAGGCACTAAAATTAGTGGCGAATT
GAGTGGCCATAATCTGGCGCTCGTAAAAGCTCAACTGCGCAAGCAAGGCATCAATCCGACCAAGGTGCGCAAGAAGTCCG
TATCGTTATTCGGCAAGGGCAAGAAGATAAAGCCGCTGGACATCGCGTTCTTTTCTCGGCAGATGGCGACAATGATGAAG
GCGGGGGTGCCGCTGCTACAATCATTTGACATCATCATCGAGGGCAGCGAAAACCCTAACATGCAAGCGCTGGTAAATTC
CCTCAAACAAGAGGTGTCTGCCGGCAATAGTTTCGCAGCAGCCTTGAGGCAGAAGCCTGAATATTTCGACGACTTGTTTT
GCAACTTAGTAGACGCTGGGGAGCAGGCTGGTGCGCTAGAGAGTCTGCTAGACCGAGTGGCGAGCTATAAGGAAAAGACC
GAAAAGCTGAAAGCCAAAATTAAAAAAGCCATGACTTATCCCGCTGCCGTTTTGATAGTAGCAATTATTGTTTCCGGCAT
CTTATTGATCAAGGTAGTGCCGCAATTTCAATCTGTATTCACCGGCTTTGGCGCGGAGCTGCCGGGGTTCACATTGATGG
TCATCGGCCTATCTGAAATCGTACAACAGTGGTGGCTAGGGCTAGTTGGCTTATTTTTTGTCGGGTTCTTCATATTTAAA
AAAGCTTATAAGCAGTCTCAGAAATTTCGAGACAGCATGGATCGTTTTCTACTGAAAACACCTATCATTGGACCATTGAT
TTTTAAATCGTCAGTGGCCCGTTATGCTCGGACACTTGCTACAACTTTTGCCGCTGGCGTGCCGCTTGTCGAAGCGTTGG
ACTCTGTCGCCGGAGCCACGGGTAACGTAGTTTTTAGACATGCGGTCAATCAGGTCAAACAGGATGTCTCCACAGGTATG
CAATTGAATTTTTCGATGCGCTCTACCGGCGTTTTCCCGAGTCTGGCAATCCAAATGACTGCCATTGGCGAGGAGTCCGG
CGCATTAGACAATATGCTGGACAAAGTAGCGACCTACTACGAGGATGAAGTCGACAATATGGTAGATAGCCTGACCAGCC
TGATGGAACCGATGATCATGGCCGTGCTGGGCGTTATAGTAGGCGGCTTAGTAATTGCGATGTACCTCCCCATCTTCAAA
CTTGGAAGCGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M5J9T5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.416

99.753

0.583
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

42.26

100

0.425
  pilC Vibrio cholerae strain A1552

41.975

100

0.42
  pilC Thermus thermophilus HB27

38.653

99.012

0.383