Detailed information NTG0588826

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KXJ79_RS03905
• Genome accession: NZ_CP079716
• Coordinates: 897136..898008 (-)
• Length: 290 a.a.
• NCBI ID: WP_219170939.1
• Uniprot ID: -
• Organism: Pseudomonas amygdali strain HS1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 892136..903008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KXJ79_RS03870 (KXJ79_03870)	-	893080..894378 (-)	1299	WP_219170935.1	NAD(P)/FAD-dependent oxidoreductase	-
KXJ79_RS26120	-	894475..894711 (-)	237	WP_306824540.1	DUF3094 family protein	-
KXJ79_RS03880 (KXJ79_03880)	-	894596..895129 (-)	534	WP_122259820.1	MOSC domain-containing protein	-
KXJ79_RS03885 (KXJ79_03885)	-	895126..895755 (-)	630	WP_219170936.1	DUF1780 domain-containing protein	-
KXJ79_RS03890 (KXJ79_03890)	-	895840..896112 (+)	273	Protein_766	hypothetical protein	-
KXJ79_RS03895 (KXJ79_03895)	yacG	896310..896519 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
KXJ79_RS03900 (KXJ79_03900)	coaE	896516..897139 (-)	624	WP_219170938.1	dephospho-CoA kinase	-
KXJ79_RS03905 (KXJ79_03905)	pilD	897136..898008 (-)	873	WP_219170939.1	A24 family peptidase	Machinery gene
KXJ79_RS03910 (KXJ79_03910)	pilC	898010..899227 (-)	1218	WP_122322325.1	type II secretion system F family protein	Machinery gene
KXJ79_RS03915 (KXJ79_03915)	pilB	899230..900924 (-)	1695	WP_122322326.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KXJ79_RS26400 (KXJ79_03920)	pilA2	901149..901565 (+)	417	WP_122322339.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32070.37 Da
• Isoelectric Point: 8.3754

>NTDB_id=588826 KXJ79_RS03905 WP_219170939.1 897136..898008(-) (pilD) [Pseudomonas amygdali strain HS1]
MPLLDFLASSPLAFVITCCILGLIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQLVFNLILPHSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQTAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITNSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=588826 KXJ79_RS03905 WP_219170939.1 897136..898008(-) (pilD) [Pseudomonas amygdali strain HS1]
ATGCCCCTCCTCGATTTCCTGGCCAGTTCACCCCTGGCCTTCGTCATTACCTGCTGCATCCTCGGCCTCATCATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTTCCCAAAATGATGGAGCGCGACTGGAAAGCCCAATCCCGCGAAATGCTCGGCC
TCCCTGCCGAACCGGACCAACTCGTCTTCAACCTGATCCTGCCGCACTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCGTGGGAGAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGTAAATGTTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCATTGGTAGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGTTTCGGCTGGCAAACGGCGG
CGATGCTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTCATCGTCAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTTTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCATGGGGCGGCTGGCAGATTCTGCCGTTGACCATCCTGCTGTCATCGCTGGTGGGT
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTTGAAAGTGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCAACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Vibrio cholerae strain A1552	53.986	95.172	0.514
pilD	Acinetobacter baumannii D1279779	51.408	97.931	0.503
pilD	Acinetobacter nosocomialis M2	50.704	97.931	0.497
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476