Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGK58_RS01715 Genome accession   NZ_CP078027
Coordinates   393599..394828 (-) Length   409 a.a.
NCBI ID   WP_125278906.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388599..399828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01690 (EGK58_001690) - 389917..390240 (+) 324 WP_125278910.1 pyrimidine/purine nucleoside phosphorylase -
  EGK58_RS01695 (EGK58_001695) rlmB 390383..391132 (+) 750 WP_125278909.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGK58_RS01700 (EGK58_001700) - 391176..392093 (+) 918 WP_125278908.1 DMT family transporter -
  EGK58_RS01705 (EGK58_001705) coaE 392132..392737 (-) 606 WP_104425599.1 dephospho-CoA kinase -
  EGK58_RS01710 (EGK58_001710) pilD 392739..393599 (-) 861 WP_125278907.1 prepilin peptidase Machinery gene
  EGK58_RS01715 (EGK58_001715) pilC 393599..394828 (-) 1230 WP_125278906.1 type II secretion system F family protein Machinery gene
  EGK58_RS01720 (EGK58_001720) pilB 394859..396568 (-) 1710 WP_125278905.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGK58_RS01725 (EGK58_001725) tpiA 396847..397638 (+) 792 WP_125278904.1 triose-phosphate isomerase -
  EGK58_RS01730 (EGK58_001730) secG 397652..397981 (+) 330 WP_125278903.1 preprotein translocase subunit SecG -
  EGK58_RS01760 (EGK58_001760) rimP 398945..399469 (+) 525 WP_125278902.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44872.30 Da        Isoelectric Point: 9.7923

>NTDB_id=586403 EGK58_RS01715 WP_125278906.1 393599..394828(-) (pilC) [Acinetobacter variabilis strain AV_175]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVIAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=586403 EGK58_RS01715 WP_125278906.1 393599..394828(-) (pilC) [Acinetobacter variabilis strain AV_175]
ATGGCAGCAGTAAAAAAAGGCCAGATGACACCGATCTTCAGTTATGAAGGGGTTGACCGCAAAGGCGCCAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTAGCAAAAGTGAACTTGCGCAAACAAGGCATTACGATCAAAACCATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTTTCTACACTGGATATCACTATCTTCACCCGTCAGCTCGCC
ACTATGATGAAAGCTGGGGTACCGTTAGTTCAGGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAATCCATCTATGCGCGA
GGTTGTACTGGGAATTAAAGGTGAAGTCGAAGGCGGGAATACTTTTGCCGGAGCATTACGAAAATACCCACAATATTTTG
ACAACCTATTCTGTTCTTTAGTTGAATCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAT
AAAGAAAAAAGTGAGCTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCCACAGTAATTGTAATAGCTGTGAT
CGTCACAATTATCCTGATGGTGAAAGTAGTTCCTGTATTCCAGGACTTATTCTCTTCATTCGGTGCAGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCCGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCCCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGAGGCGGTATTAAAAATCAAGGAAGATGTT
GCGACAGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCCTCTATGGCCGTACAAATGGTTGCAATTGG
TGAAGAATCAGGTGCATTGGATGCCATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTTGATG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCAATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.189

99.511

0.888
  pilC Acinetobacter baylyi ADP1

83.292

99.511

0.829
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.149

97.066

0.516
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

42.157

99.756

0.421
  pilC Vibrio campbellii strain DS40M4

41.457

97.311

0.403