NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	EGK58_RS01710	Genome accession	NZ_CP078027
Coordinates	392739..393599 (-)	Length	286 a.a.
NCBI ID	WP_125278907.1	Uniprot ID	-
Organism	Acinetobacter variabilis strain AV_175
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 387739..398599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGK58_RS01685 (EGK58_001685)	recN	387819..389480 (-)	1662	WP_125278911.1	DNA repair protein RecN	-
EGK58_RS01690 (EGK58_001690)	-	389917..390240 (+)	324	WP_125278910.1	pyrimidine/purine nucleoside phosphorylase	-
EGK58_RS01695 (EGK58_001695)	rlmB	390383..391132 (+)	750	WP_125278909.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EGK58_RS01700 (EGK58_001700)	-	391176..392093 (+)	918	WP_125278908.1	DMT family transporter	-
EGK58_RS01705 (EGK58_001705)	coaE	392132..392737 (-)	606	WP_104425599.1	dephospho-CoA kinase	-
EGK58_RS01710 (EGK58_001710)	pilD	392739..393599 (-)	861	WP_125278907.1	prepilin peptidase	Machinery gene
EGK58_RS01715 (EGK58_001715)	pilC	393599..394828 (-)	1230	WP_125278906.1	type II secretion system F family protein	Machinery gene
EGK58_RS01720 (EGK58_001720)	pilB	394859..396568 (-)	1710	WP_125278905.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EGK58_RS01725 (EGK58_001725)	tpiA	396847..397638 (+)	792	WP_125278904.1	triose-phosphate isomerase	-
EGK58_RS01730 (EGK58_001730)	secG	397652..397981 (+)	330	WP_125278903.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32126.37 Da Isoelectric Point: 7.7903

                                >NTDB_id=586402 EGK58_RS01710 WP_125278907.1 392739..393599(-) (pilD) [Acinetobacter variabilis strain AV_175]

MQDFILYFSQNPTALYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP

IRWYQNVPVISWILLRGKCGNCQNPISIRYPFIELLTAACALIVVAVFGPTIQMLFGLVFTYVLITLTFIDFDTQLLPDR

YTLPLAALGLGINSYAIYTTPDSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=586402 EGK58_RS01710 WP_125278907.1 392739..393599(-) (pilD) [Acinetobacter variabilis strain AV_175]

ATGCAAGATTTTATTTTATATTTCAGTCAAAACCCAACTGCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG

TAGCTTTTTAAACGTTGTCATTTATCGCACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAACTGTTTTTGC

ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAACCAGCTTCAACCTGCCCGAAATGTCAGACTCCT

ATTCGCTGGTATCAAAATGTTCCGGTGATTAGTTGGATTTTATTACGTGGTAAATGTGGTAACTGTCAGAATCCTATCAG

TATCCGCTATCCATTTATTGAGCTTTTGACAGCTGCTTGTGCACTGATAGTGGTGGCAGTATTCGGGCCTACTATACAGA

TGCTGTTTGGTCTGGTTTTTACCTATGTCCTAATTACCCTCACCTTTATTGATTTCGACACCCAATTATTACCTGATCGC

TATACCCTGCCGCTGGCTGCACTCGGCCTGGGTATTAATAGTTATGCGATTTATACTACCCCTGATTCTGCCATCTGGGG

CTATATCATTGGCTTCTTATGCTTGTGGGTGGTGTACTATCTGTTTAAGCTGGTGACCGGCAAGGAAGGTATGGGCTATG

GAGATTTCAAACTGTTAGCGGCCCTAGGTGCCTGGATGGGGCCTATGCTCCTACCACTCATTGTATTATTGTCATCATTA

GTGGGTGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAATCAGCCCTTTGCCTTTGGCCCTTATATTGCCAT

TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATTTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	80.702	99.65	0.804
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Vibrio cholerae strain A1552	54.307	93.357	0.507
pilD	Vibrio campbellii strain DS40M4	51.971	97.552	0.507
pilD	Neisseria gonorrhoeae MS11	47.253	95.455	0.451

Detailed information NTG0586402