Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   B1NLA3E_RS21985 Genome accession   NC_021171
Coordinates   4582784..4583179 (-) Length   131 a.a.
NCBI ID   WP_015596018.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4577784..4588179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS21955 (B1NLA3E_21170) - 4578132..4578683 (-) 552 WP_015596013.1 hypothetical protein -
  B1NLA3E_RS21960 (B1NLA3E_21175) - 4578699..4579232 (-) 534 WP_015596014.1 stage II sporulation protein M -
  B1NLA3E_RS21965 (B1NLA3E_21180) - 4579222..4579899 (-) 678 WP_015596015.1 ABC transporter ATP-binding protein -
  B1NLA3E_RS21970 (B1NLA3E_21185) - 4579892..4581355 (-) 1464 WP_015596016.1 hypothetical protein -
  B1NLA3E_RS21975 (B1NLA3E_21190) - 4581793..4581984 (-) 192 WP_015596017.1 hypothetical protein -
  B1NLA3E_RS21980 - 4582564..4582779 (-) 216 WP_041580793.1 hypothetical protein -
  B1NLA3E_RS21985 (B1NLA3E_21195) ssbB 4582784..4583179 (-) 396 WP_015596018.1 single-stranded DNA-binding protein Machinery gene
  B1NLA3E_RS21990 (B1NLA3E_21200) - 4583441..4583908 (+) 468 WP_015596019.1 YwpF-like family protein -
  B1NLA3E_RS21995 (B1NLA3E_21205) - 4583959..4584306 (-) 348 WP_015596020.1 hypothetical protein -
  B1NLA3E_RS22000 (B1NLA3E_21210) fabZ 4584472..4584906 (-) 435 WP_015596021.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B1NLA3E_RS24505 (B1NLA3E_21215) - 4585107..4585535 (-) 429 WP_015596022.1 DNA-directed RNA polymerase subunit beta -
  B1NLA3E_RS22010 (B1NLA3E_21220) - 4585751..4586752 (-) 1002 WP_015596023.1 rod shape-determining protein -
  B1NLA3E_RS22015 (B1NLA3E_21225) spoIIID 4587054..4587326 (-) 273 WP_015596024.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14729.70 Da        Isoelectric Point: 7.9043

>NTDB_id=58418 B1NLA3E_RS21985 WP_015596018.1 4582784..4583179(-) (ssbB) [Bacillus sp. 1NLA3E]
MINQVTLVGRLTKDPEIRVTTEGIPVTHVTLAVNRHYKNQSGQIEADFVQCTLWRKAAENTVHYCRKGSVVGITGRIQTR
NYENNEGRRVYVTEVVAEGVQFLGKRVTESEHVTIPVPEPDPVPVTFSREA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=58418 B1NLA3E_RS21985 WP_015596018.1 4582784..4583179(-) (ssbB) [Bacillus sp. 1NLA3E]
ATGATTAACCAAGTTACATTAGTAGGCAGATTAACCAAAGACCCGGAAATAAGGGTTACGACTGAAGGCATCCCTGTCAC
GCATGTCACACTAGCTGTAAACCGTCACTATAAAAATCAGAGTGGCCAGATTGAGGCTGATTTTGTTCAATGCACACTGT
GGCGGAAAGCGGCTGAAAATACGGTTCATTATTGCCGTAAGGGCTCCGTTGTCGGTATTACCGGCAGAATCCAAACCCGT
AATTACGAAAATAATGAAGGACGCAGAGTGTATGTGACTGAAGTTGTGGCAGAGGGTGTTCAGTTTCTTGGAAAAAGAGT
GACAGAGTCTGAGCATGTAACAATACCAGTACCTGAACCGGATCCTGTGCCCGTGACTTTTTCGAGGGAGGCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.932

78.626

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.165

78.626

0.481
  ssb Latilactobacillus sakei subsp. sakei 23K

53.704

82.443

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.598

81.679

0.397
  ssbB/cilA Streptococcus mitis NCTC 12261

45.794

81.679

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.794

81.679

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

44.86

81.679

0.366
  ssbB/cilA Streptococcus pneumoniae D39

44.86

81.679

0.366
  ssbB/cilA Streptococcus pneumoniae R6

44.86

81.679

0.366
  ssbB/cilA Streptococcus mitis SK321

44.86

81.679

0.366

Multiple sequence alignment