Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MUO47_RS09435 Genome accession   NZ_CP094923
Coordinates   1853230..1854342 (+) Length   370 a.a.
NCBI ID   WP_024273557.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1824     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1848230..1859342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO47_RS09410 (MUO47_09400) rnpA 1848493..1848846 (-) 354 WP_001789343.1 ribonuclease P protein component -
  MUO47_RS09415 (MUO47_09405) rpmH 1848967..1849104 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  MUO47_RS09420 (MUO47_09410) dnaA 1849835..1851196 (+) 1362 WP_277445820.1 chromosomal replication initiator protein DnaA -
  MUO47_RS09425 (MUO47_09415) dnaN 1851474..1852607 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  MUO47_RS09430 (MUO47_09420) yaaA 1852988..1853233 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  MUO47_RS09435 (MUO47_09425) recF 1853230..1854342 (+) 1113 WP_024273557.1 DNA replication/repair protein RecF Machinery gene
  MUO47_RS09440 (MUO47_09430) gyrB 1854352..1856286 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MUO47_RS09445 (MUO47_09435) gyrA 1856323..1858986 (+) 2664 WP_000819084.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42371.42 Da        Isoelectric Point: 6.5805

>NTDB_id=581104 MUO47_RS09435 WP_024273557.1 1853230..1854342(+) (recF) [Staphylococcus aureus strain 1824]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIAHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=581104 MUO47_RS09435 WP_024273557.1 1853230..1854342(+) (recF) [Staphylococcus aureus strain 1824]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGCTCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497