Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | I6L30_RS12555 | Genome accession | NZ_CP077365 |
| Coordinates | 2661487..2661930 (+) | Length | 147 a.a. |
| NCBI ID | WP_086497062.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain FDAARGOS 1400 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2656487..2666930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L30_RS12535 (I6L30_12535) | - | 2657880..2658767 (+) | 888 | WP_216984457.1 | metal-dependent hydrolase | - |
| I6L30_RS12540 (I6L30_12540) | - | 2658898..2659488 (+) | 591 | WP_002051712.1 | LemA family protein | - |
| I6L30_RS12545 (I6L30_12545) | - | 2659510..2660592 (+) | 1083 | WP_174722890.1 | TPM domain-containing protein | - |
| I6L30_RS12550 (I6L30_12550) | - | 2660586..2661146 (+) | 561 | WP_216984458.1 | TPM domain-containing protein | - |
| I6L30_RS12555 (I6L30_12555) | comP | 2661487..2661930 (+) | 444 | WP_086497062.1 | pilin | Machinery gene |
| I6L30_RS12560 (I6L30_12560) | - | 2662055..2663689 (+) | 1635 | WP_216984459.1 | O-antigen ligase family protein | - |
| I6L30_RS12565 (I6L30_12565) | - | 2663855..2665483 (+) | 1629 | WP_216984460.1 | PglL family O-oligosaccharyltransferase | - |
| I6L30_RS12570 (I6L30_12570) | bfr | 2665525..2665989 (-) | 465 | WP_000678123.1 | bacterioferritin | - |
| I6L30_RS12575 (I6L30_12575) | - | 2666234..2666428 (-) | 195 | WP_216135547.1 | bacterioferritin-associated ferredoxin | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15238.51 Da Isoelectric Point: 8.4476
>NTDB_id=580938 I6L30_RS12555 WP_086497062.1 2661487..2661930(+) (comP) [Acinetobacter seifertii strain FDAARGOS 1400]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTVIAENAGNGASSLVLGVPNFSPTDSVSTI
TPNATTGAIVISYTSKVKSIQLTLTPYDGGGTTALVAGTVPTNQITWKCTVATPADNNKYVPANCRS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTVIAENAGNGASSLVLGVPNFSPTDSVSTI
TPNATTGAIVISYTSKVKSIQLTLTPYDGGGTTALVAGTVPTNQITWKCTVATPADNNKYVPANCRS
Nucleotide
Download Length: 444 bp
>NTDB_id=580938 I6L30_RS12555 WP_086497062.1 2661487..2661930(+) (comP) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTGGTTGCGATTATTGGTATTTTGGCAGCGATCGCGAT
TCCTGCTTATCAGGATTACATTGTCCGCTCAAAAGTAACAGAAGGTTTAAATCTAGCATCTTCTTATAAAACTGTAATTG
CTGAAAATGCAGGAAATGGTGCTTCAAGTTTAGTTTTAGGAGTGCCTAATTTTAGCCCAACAGATAGTGTTTCAACAATC
ACACCAAATGCTACTACAGGTGCAATTGTAATTAGTTACACAAGTAAAGTAAAAAGTATCCAACTTACTTTAACTCCTTA
TGATGGTGGTGGTACTACAGCATTAGTTGCAGGAACGGTTCCAACAAATCAAATTACTTGGAAGTGTACAGTCGCTACAC
CTGCGGACAATAATAAATATGTTCCAGCAAATTGCCGTAGCTAA
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTGGTTGCGATTATTGGTATTTTGGCAGCGATCGCGAT
TCCTGCTTATCAGGATTACATTGTCCGCTCAAAAGTAACAGAAGGTTTAAATCTAGCATCTTCTTATAAAACTGTAATTG
CTGAAAATGCAGGAAATGGTGCTTCAAGTTTAGTTTTAGGAGTGCCTAATTTTAGCCCAACAGATAGTGTTTCAACAATC
ACACCAAATGCTACTACAGGTGCAATTGTAATTAGTTACACAAGTAAAGTAAAAAGTATCCAACTTACTTTAACTCCTTA
TGATGGTGGTGGTACTACAGCATTAGTTGCAGGAACGGTTCCAACAAATCAAATTACTTGGAAGTGTACAGTCGCTACAC
CTGCGGACAATAATAAATATGTTCCAGCAAATTGCCGTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
48.765 |
100 |
0.537 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
46.541 |
100 |
0.503 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
46.259 |
100 |
0.463 |
| pilA2 | Legionella pneumophila str. Paris |
46.259 |
100 |
0.463 |
| pilA | Acinetobacter baumannii strain A118 |
44.218 |
100 |
0.442 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.75 |
100 |
0.422 |
| pilA | Pseudomonas aeruginosa PAK |
37.423 |
100 |
0.415 |
| pilE | Neisseria gonorrhoeae MS11 |
36.076 |
100 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.241 |
98.639 |
0.367 |