Detailed information NTG0058028

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: SPN034156_RS04955
• Genome accession: NC_021006
• Coordinates: 906395..906799 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588013.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae SPN034156
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 901395..911799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPN034156_RS04915 (SPN034156_08800)	rnpA	901809..902180 (-)	372	WP_000739244.1	ribonuclease P protein component	-
SPN034156_RS13030	-	902197..902328 (-)	132	WP_000768904.1	hypothetical protein	-
SPN034156_RS04920 (SPN034156_08810)	-	902329..903519 (-)	1191	WP_000167765.1	acetate kinase	-
SPN034156_RS04925 (SPN034156_08820)	comYH	903570..904523 (-)	954	WP_000345099.1	class I SAM-dependent methyltransferase	Machinery gene
SPN034156_RS11320 (SPN034156_08830)	-	904584..905178 (-)	595	Protein_911	methyltransferase domain-containing protein	-
SPN034156_RS04940 (SPN034156_08840)	comGG/cglG	905315..905728 (-)	414	WP_000265624.1	competence type IV pilus minor pilin ComGG	Machinery gene
SPN034156_RS04945 (SPN034156_08850)	comGF/cglF	905706..906167 (-)	462	WP_000250542.1	competence type IV pilus minor pilin ComGF	Machinery gene
SPN034156_RS04950 (SPN034156_08860)	comGE/cglE	906130..906432 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
SPN034156_RS04955 (SPN034156_08870)	comGD/cglD	906395..906799 (-)	405	WP_000588013.1	competence type IV pilus minor pilin ComGD	Machinery gene
SPN034156_RS04960 (SPN034156_08880)	comGC/cglC	906792..907118 (-)	327	WP_000738636.1	comG operon protein ComGC	Machinery gene
SPN034156_RS04965 (SPN034156_08890)	comGB/cglB	907120..908136 (-)	1017	WP_074017570.1	competence type IV pilus assembly protein ComGB	Machinery gene
SPN034156_RS04970 (SPN034156_08900)	comGA/cglA/cilD	908084..909025 (-)	942	WP_000249552.1	competence type IV pilus ATPase ComGA	Machinery gene
SPN034156_RS04975 (SPN034156_08910)	-	909101..909466 (-)	366	WP_000286415.1	DUF1033 family protein	-
SPN034156_RS04980 (SPN034156_08920)	-	909617..910675 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14665.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=58028 SPN034156_RS04955 WP_000588013.1 906395..906799(-) (comGD/cglD) [Streptococcus pneumoniae SPN034156]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTNLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=58028 SPN034156_RS04955 WP_000588013.1 906395..906799(-) (comGD/cglD) [Streptococcus pneumoniae SPN034156]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAATCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	58.268	94.776	0.552
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47