Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPN034156_RS04925 Genome accession   NC_021006
Coordinates   903570..904523 (-) Length   317 a.a.
NCBI ID   WP_000345099.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898570..909523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS04900 (SPN034156_08770) - 899331..899954 (-) 624 WP_000932635.1 hypothetical protein -
  SPN034156_RS04905 (SPN034156_08780) jag 900005..900991 (-) 987 WP_000260014.1 RNA-binding cell elongation regulator Jag/EloR -
  SPN034156_RS04910 (SPN034156_08790) - 901010..901834 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  SPN034156_RS04915 (SPN034156_08800) rnpA 901809..902180 (-) 372 WP_000739244.1 ribonuclease P protein component -
  SPN034156_RS13030 - 902197..902328 (-) 132 WP_000768904.1 hypothetical protein -
  SPN034156_RS04920 (SPN034156_08810) - 902329..903519 (-) 1191 WP_000167765.1 acetate kinase -
  SPN034156_RS04925 (SPN034156_08820) comYH 903570..904523 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  SPN034156_RS11320 (SPN034156_08830) - 904584..905178 (-) 595 Protein_911 methyltransferase domain-containing protein -
  SPN034156_RS04940 (SPN034156_08840) comGG/cglG 905315..905728 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPN034156_RS04945 (SPN034156_08850) comGF/cglF 905706..906167 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPN034156_RS04950 (SPN034156_08860) comGE/cglE 906130..906432 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPN034156_RS04955 (SPN034156_08870) comGD/cglD 906395..906799 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPN034156_RS04960 (SPN034156_08880) comGC/cglC 906792..907118 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  SPN034156_RS04965 (SPN034156_08890) comGB/cglB 907120..908136 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPN034156_RS04970 (SPN034156_08900) comGA/cglA/cilD 908084..909025 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  SPN034156_RS04975 (SPN034156_08910) - 909101..909466 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35718.89 Da        Isoelectric Point: 4.2474

>NTDB_id=58024 SPN034156_RS04925 WP_000345099.1 903570..904523(-) (comYH) [Streptococcus pneumoniae SPN034156]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=58024 SPN034156_RS04925 WP_000345099.1 903570..904523(-) (comYH) [Streptococcus pneumoniae SPN034156]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment