Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KSF82_RS10165 Genome accession   NZ_CP077098
Coordinates   2043569..2044039 (-) Length   156 a.a.
NCBI ID   WP_220668411.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RGB-095930     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2014291..2055180 2043569..2044039 within 0


Gene organization within MGE regions


Location: 2014291..2055180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSF82_RS09935 (KSF82_09925) - 2014291..2014806 (-) 516 WP_220668389.1 type 1 glutamine amidotransferase domain-containing protein -
  KSF82_RS09940 (KSF82_09930) - 2014937..2015098 (-) 162 WP_001005407.1 SE1561 family protein -
  KSF82_RS09945 (KSF82_09935) - 2015425..2015526 (+) 102 WP_011447034.1 hypothetical protein -
  KSF82_RS09950 (KSF82_09940) - 2015849..2016034 (-) 186 WP_001286805.1 hypothetical protein -
  KSF82_RS09955 (KSF82_09945) - 2016036..2016146 (-) 111 WP_111187485.1 hypothetical protein -
  KSF82_RS09960 (KSF82_09950) - 2016218..2016370 (-) 153 WP_076747102.1 hypothetical protein -
  KSF82_RS09965 (KSF82_09955) - 2016581..2017336 (-) 756 WP_000861027.1 CHAP domain-containing protein -
  KSF82_RS09970 (KSF82_09960) - 2017348..2017602 (-) 255 WP_000611512.1 phage holin -
  KSF82_RS09975 (KSF82_09965) - 2017752..2019638 (-) 1887 WP_220668390.1 glucosaminidase domain-containing protein -
  KSF82_RS09980 (KSF82_09970) - 2019762..2020136 (-) 375 WP_220668391.1 hypothetical protein -
  KSF82_RS09985 (KSF82_09975) - 2020158..2021429 (-) 1272 WP_220668392.1 phage baseplate upper protein -
  KSF82_RS09990 (KSF82_09980) - 2021446..2022489 (-) 1044 WP_220668393.1 SGNH/GDSL hydrolase family protein -
  KSF82_RS09995 (KSF82_09985) - 2022501..2023193 (-) 693 WP_000818132.1 hypothetical protein -
  KSF82_RS10000 (KSF82_09990) - 2023197..2024594 (-) 1398 WP_000593860.1 DUF7643 domain-containing protein -
  KSF82_RS10005 (KSF82_09995) - 2024607..2025539 (-) 933 WP_048665712.1 phage tail family protein -
  KSF82_RS10010 (KSF82_10000) - 2025552..2028659 (-) 3108 WP_220668394.1 phage tail protein -
  KSF82_RS10015 (KSF82_10005) - 2028675..2029025 (-) 351 WP_048665710.1 hypothetical protein -
  KSF82_RS10020 (KSF82_10010) - 2029055..2029435 (-) 381 WP_048665709.1 tail assembly chaperone -
  KSF82_RS10025 (KSF82_10015) - 2029494..2030147 (-) 654 WP_220668395.1 phage major tail protein, TP901-1 family -
  KSF82_RS10030 (KSF82_10020) - 2030165..2030560 (-) 396 WP_220668396.1 hypothetical protein -
  KSF82_RS10035 (KSF82_10025) - 2030573..2030920 (-) 348 WP_089535795.1 HK97-gp10 family putative phage morphogenesis protein -
  KSF82_RS10040 (KSF82_10030) - 2030910..2031167 (-) 258 WP_220668397.1 hypothetical protein -
  KSF82_RS10045 (KSF82_10035) - 2031221..2031553 (-) 333 WP_089535797.1 phage head-tail connector protein -
  KSF82_RS10050 (KSF82_10040) - 2031564..2032013 (-) 450 WP_220668398.1 Ig-like domain-containing protein -
  KSF82_RS10055 (KSF82_10045) - 2032103..2033014 (-) 912 WP_220668399.1 capsid protein -
  KSF82_RS10060 (KSF82_10050) - 2033033..2033656 (-) 624 WP_089535800.1 DUF4355 domain-containing protein -
  KSF82_RS10065 (KSF82_10055) - 2033773..2034717 (-) 945 Protein_1961 minor capsid protein -
  KSF82_RS10070 (KSF82_10060) - 2034710..2036155 (-) 1446 WP_220668401.1 phage portal protein -
  KSF82_RS10075 (KSF82_10065) - 2036167..2037441 (-) 1275 WP_089535803.1 PBSX family phage terminase large subunit -
  KSF82_RS10080 (KSF82_10070) - 2037428..2037868 (-) 441 WP_001003272.1 terminase small subunit -
  KSF82_RS10085 (KSF82_10075) - 2038057..2038479 (-) 423 WP_000162696.1 RinA family phage transcriptional activator -
  KSF82_RS10090 (KSF82_10080) - 2038503..2038649 (-) 147 WP_000989998.1 hypothetical protein -
  KSF82_RS10095 (KSF82_10085) - 2038650..2039012 (-) 363 WP_220668402.1 hypothetical protein -
  KSF82_RS10100 (KSF82_10090) rinB 2039013..2039186 (-) 174 WP_220668403.1 transcriptional activator RinB -
  KSF82_RS10105 (KSF82_10095) - 2039183..2039389 (-) 207 WP_111187501.1 DUF1381 domain-containing protein -
  KSF82_RS10110 (KSF82_10100) - 2039426..2039959 (-) 534 WP_220668404.1 dUTP diphosphatase -
  KSF82_RS10115 (KSF82_10105) - 2039952..2040200 (-) 249 WP_220668405.1 DUF1024 family protein -
  KSF82_RS10120 (KSF82_10110) - 2040193..2040543 (-) 351 WP_220668406.1 hypothetical protein -
  KSF82_RS10125 (KSF82_10115) - 2040540..2040887 (-) 348 WP_220668407.1 YopX family protein -
  KSF82_RS10130 (KSF82_10120) - 2040952..2041200 (-) 249 WP_089535809.1 SAV1978 family virulence-associated passenger protein -
  KSF82_RS10135 (KSF82_10125) - 2041201..2041560 (-) 360 WP_220668408.1 SA1788 family PVL leukocidin-associated protein -
  KSF82_RS10140 (KSF82_10130) - 2041561..2041828 (-) 268 Protein_1976 helix-turn-helix domain-containing protein -
  KSF82_RS10145 (KSF82_10135) - 2041829..2042014 (-) 186 WP_001187254.1 DUF3113 family protein -
  KSF82_RS10150 (KSF82_10140) - 2042014..2042421 (-) 408 WP_089535934.1 RusA family crossover junction endodeoxyribonuclease -
  KSF82_RS10155 (KSF82_10145) - 2042430..2042648 (-) 219 WP_000338528.1 hypothetical protein -
  KSF82_RS10160 (KSF82_10150) - 2042655..2043539 (-) 885 WP_220668410.1 DnaD domain protein -
  KSF82_RS10165 (KSF82_10155) ssbA 2043569..2044039 (-) 471 WP_220668411.1 single-stranded DNA-binding protein Machinery gene
  KSF82_RS10170 (KSF82_10160) - 2044040..2044657 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  KSF82_RS10175 (KSF82_10165) - 2044738..2045658 (-) 921 WP_000138475.1 recombinase RecT -
  KSF82_RS10180 (KSF82_10170) - 2045660..2047615 (-) 1956 WP_220668412.1 AAA family ATPase -
  KSF82_RS10185 (KSF82_10175) - 2047612..2047875 (-) 264 WP_001205732.1 hypothetical protein -
  KSF82_RS10190 (KSF82_10180) - 2047884..2048144 (-) 261 WP_089535939.1 DUF1108 family protein -
  KSF82_RS10195 (KSF82_10185) - 2048210..2048515 (-) 306 WP_089535940.1 helix-turn-helix domain-containing protein -
  KSF82_RS10200 (KSF82_10190) - 2048602..2048922 (-) 321 WP_089535941.1 hypothetical protein -
  KSF82_RS10205 (KSF82_10195) - 2048923..2049090 (-) 168 WP_000048125.1 DUF1270 domain-containing protein -
  KSF82_RS10210 (KSF82_10200) - 2049083..2049304 (-) 222 WP_089535942.1 hypothetical protein -
  KSF82_RS10215 (KSF82_10205) - 2049376..2049978 (+) 603 WP_031877691.1 hypothetical protein -
  KSF82_RS10220 (KSF82_10210) - 2049988..2050112 (-) 125 Protein_1992 hypothetical protein -
  KSF82_RS10225 (KSF82_10215) - 2050140..2050451 (-) 312 WP_089535944.1 hypothetical protein -
  KSF82_RS10230 (KSF82_10220) - 2050528..2050755 (+) 228 WP_089535945.1 hypothetical protein -
  KSF82_RS10235 (KSF82_10225) - 2050752..2050919 (-) 168 WP_180895958.1 hypothetical protein -
  KSF82_RS10240 (KSF82_10230) - 2050932..2051726 (-) 795 WP_220668413.1 phage antirepressor -
  KSF82_RS10245 (KSF82_10235) - 2051985..2052167 (-) 183 WP_046597466.1 hypothetical protein -
  KSF82_RS10250 (KSF82_10240) - 2052183..2052431 (-) 249 WP_089536025.1 helix-turn-helix domain-containing protein -
  KSF82_RS10255 (KSF82_10245) - 2052596..2052919 (+) 324 WP_045179171.1 helix-turn-helix domain-containing protein -
  KSF82_RS10260 (KSF82_10250) - 2052932..2053393 (+) 462 WP_089536026.1 toxin -
  KSF82_RS10265 (KSF82_10255) - 2053409..2053840 (+) 432 WP_089536027.1 hypothetical protein -
  KSF82_RS10270 (KSF82_10260) - 2054134..2055180 (+) 1047 WP_001145732.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17642.47 Da        Isoelectric Point: 5.9191

>NTDB_id=579262 KSF82_RS10165 WP_220668411.1 2043569..2044039(-) (ssbA) [Staphylococcus aureus strain RGB-095930]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFFNIVVFKKQAENANKYLSKGSLAGVDGRLRTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTHGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=579262 KSF82_RS10165 WP_220668411.1 2043569..2044039(-) (ssbA) [Staphylococcus aureus strain RGB-095930]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTTTTAATATCGTCGTAT
TTAAAAAACAAGCAGAGAACGCTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACGAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACATGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCTAATGGTCCTATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.603
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.949

0.397
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.333

76.923

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

48.333

76.923

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

47.5

76.923

0.365
  ssbB/cilA Streptococcus pneumoniae D39

47.5

76.923

0.365
  ssbB/cilA Streptococcus pneumoniae R6

47.5

76.923

0.365
  ssbB/cilA Streptococcus mitis SK321

47.5

76.923

0.365