Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HU759_RS05040 Genome accession   NZ_CP077082
Coordinates   1143225..1144433 (-) Length   402 a.a.
NCBI ID   WP_169986846.1    Uniprot ID   A0A7Y7V6N5
Organism   Pseudomonas sp. OE 28.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138225..1149433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU759_RS05005 (HU759_005005) - 1139547..1139720 (-) 174 WP_017134503.1 DUF3094 family protein -
  HU759_RS05010 (HU759_005010) - 1139810..1140439 (-) 630 WP_017134504.1 DUF1780 domain-containing protein -
  HU759_RS05015 (HU759_005015) - 1140569..1141258 (+) 690 WP_099550506.1 energy-coupling factor ABC transporter permease -
  HU759_RS05020 (HU759_005020) - 1141333..1141548 (+) 216 WP_003171680.1 hypothetical protein -
  HU759_RS05025 (HU759_005025) yacG 1141545..1141745 (-) 201 WP_017134507.1 DNA gyrase inhibitor YacG -
  HU759_RS05030 (HU759_005030) coaE 1141742..1142365 (-) 624 WP_017134508.1 dephospho-CoA kinase -
  HU759_RS05035 (HU759_005035) pilD 1142362..1143228 (-) 867 WP_275942351.1 A24 family peptidase Machinery gene
  HU759_RS05040 (HU759_005040) pilC 1143225..1144433 (-) 1209 WP_169986846.1 type II secretion system F family protein Machinery gene
  HU759_RS05045 (HU759_005045) - 1144636..1145049 (+) 414 WP_017134511.1 pilin -
  HU759_RS05055 (HU759_005055) - 1145353..1145658 (+) 306 WP_017134512.1 DUF6388 family protein -
  HU759_RS05060 (HU759_005060) nadC 1145713..1146561 (-) 849 WP_186618175.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HU759_RS05065 (HU759_005065) - 1146806..1148962 (+) 2157 WP_186618176.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43354.80 Da        Isoelectric Point: 9.9548

>NTDB_id=578859 HU759_RS05040 WP_169986846.1 1143225..1144433(-) (pilC) [Pseudomonas sp. OE 28.3]
MNDASTIYAWEGTNRKGRRVSGQATGHNLALIKAQLRQQGIYPGRVRKKASHRPYFAAPIKPADIALFTRQLATLLKAGI
ALLQAFDIICEGFENRQMRALIKGLKQEIAAGSSLAAALRKQPRHFDDLYCNLIAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVACLVSAVLLIHVVPQFQNIFAGVNGQLPGFTLLVIALSNFLQHAWWMLALGLGMAITALRHAY
RAYPGFRDGLDAALLNAPLAGTLLRRSAIARYARTLSTTFAAGVPLVQALDSVAGAAGNGLFTKAIEHMRHDVSTGVPLN
QSMAHSGLFPSMAIQMTAIGEESGTLDLMLEKVANHYEADVENLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=578859 HU759_RS05040 WP_169986846.1 1143225..1144433(-) (pilC) [Pseudomonas sp. OE 28.3]
ATGAATGACGCTTCAACGATCTACGCCTGGGAAGGCACCAACCGCAAAGGCCGCCGGGTGTCCGGGCAAGCCACCGGGCA
TAACCTGGCACTGATCAAGGCACAGCTGCGCCAGCAGGGGATTTACCCCGGGCGCGTGCGCAAAAAGGCTTCGCACCGGC
CATATTTTGCCGCGCCGATAAAACCCGCCGACATCGCGCTGTTCACGCGCCAATTGGCGACCCTGTTAAAGGCAGGCATT
GCGCTGCTGCAGGCGTTCGACATCATCTGCGAAGGCTTCGAAAACCGGCAGATGCGCGCGTTGATAAAAGGCTTGAAGCA
GGAGATTGCCGCCGGTAGTAGCCTGGCAGCAGCGCTGCGCAAACAGCCGCGTCACTTTGATGACTTGTATTGCAACCTGA
TTGCCGCAGGCGAACAGGCAGGCGCCCTGGAAACATTGCTCGAACGGGTGGCGATTCACCTGGAAAAAAGCCAGCAGCTC
AAGGCGCGAATCAAAAAAGCCATGACCTACCCTATCGCCGTAATCGTCGTCGCCTGCCTGGTCAGCGCAGTTTTGCTTAT
TCACGTGGTGCCGCAGTTCCAGAACATCTTCGCCGGGGTAAACGGCCAACTGCCGGGCTTTACCTTGCTGGTGATTGCGC
TGTCCAACTTCCTGCAGCACGCCTGGTGGATGCTTGCCTTGGGGCTGGGTATGGCAATAACTGCGCTGCGCCATGCCTAT
CGGGCTTACCCGGGGTTTCGTGACGGGCTGGATGCCGCTTTGTTGAACGCGCCCCTGGCTGGCACACTGCTGAGGCGCTC
AGCCATCGCCCGCTACGCCCGTACACTTTCAACCACCTTTGCCGCGGGCGTGCCATTGGTGCAGGCTCTGGACTCCGTGG
CAGGCGCGGCAGGCAATGGATTGTTCACAAAGGCGATCGAACATATGCGGCACGATGTATCCACAGGTGTGCCGTTGAAC
CAGTCCATGGCCCACAGCGGGCTGTTCCCCAGCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGGCACCCTGGA
CCTCATGCTGGAAAAAGTCGCCAACCACTATGAAGCCGATGTGGAGAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CACTGATCATGGTGGTGTTGGGGGGCATTGTCGGCGCGTTGGTGATTGCGATGTATCTGCCGGTGTTCCAGTTGGGGTCG
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7V6N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

98.507

0.57
  pilC Acinetobacter baylyi ADP1

52.02

98.507

0.512
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Legionella pneumophila strain ERS1305867

47.859

98.756

0.473
  pilG Neisseria gonorrhoeae MS11

40.506

98.259

0.398
  pilG Neisseria meningitidis 44/76-A

40

98.259

0.393
  pilC Vibrio cholerae strain A1552

37.592

100

0.381
  pilC Vibrio campbellii strain DS40M4

37.811

100

0.378
  pilC Thermus thermophilus HB27

37.845

99.254

0.376