Detailed information NTG0578858

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HU759_RS05035
• Genome accession: NZ_CP077082
• Coordinates: 1142362..1143228 (-)
• Length: 288 a.a.
• NCBI ID: WP_275942351.1
• Uniprot ID: -
• Organism: Pseudomonas sp. OE 28.3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1137362..1148228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU759_RS05000 (HU759_005000)	-	1138188..1139486 (-)	1299	WP_170036214.1	NAD(P)/FAD-dependent oxidoreductase	-
HU759_RS05005 (HU759_005005)	-	1139547..1139720 (-)	174	WP_017134503.1	DUF3094 family protein	-
HU759_RS05010 (HU759_005010)	-	1139810..1140439 (-)	630	WP_017134504.1	DUF1780 domain-containing protein	-
HU759_RS05015 (HU759_005015)	-	1140569..1141258 (+)	690	WP_099550506.1	energy-coupling factor ABC transporter permease	-
HU759_RS05020 (HU759_005020)	-	1141333..1141548 (+)	216	WP_003171680.1	hypothetical protein	-
HU759_RS05025 (HU759_005025)	yacG	1141545..1141745 (-)	201	WP_017134507.1	DNA gyrase inhibitor YacG	-
HU759_RS05030 (HU759_005030)	coaE	1141742..1142365 (-)	624	WP_017134508.1	dephospho-CoA kinase	-
HU759_RS05035 (HU759_005035)	pilD	1142362..1143228 (-)	867	WP_275942351.1	A24 family peptidase	Machinery gene
HU759_RS05040 (HU759_005040)	pilC	1143225..1144433 (-)	1209	WP_169986846.1	type II secretion system F family protein	Machinery gene
HU759_RS05045 (HU759_005045)	-	1144636..1145049 (+)	414	WP_017134511.1	pilin	-
HU759_RS05055 (HU759_005055)	-	1145353..1145658 (+)	306	WP_017134512.1	DUF6388 family protein	-
HU759_RS05060 (HU759_005060)	nadC	1145713..1146561 (-)	849	WP_186618175.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31590.90 Da
• Isoelectric Point: 8.0888

>NTDB_id=578858 HU759_RS05035 WP_275942351.1 1142362..1143228(-) (pilD) [Pseudomonas sp. OE 28.3]
MSLLLGEQPWVFVGMALVLGLIVGSFLNVLVWRLPKMLVREWRAQAQEILGLPADPAGPVYNLMHPNSCCAHCSQPIRPW
ENIPVLSYLLLKGRCARCRESISARYPFTELACALLSAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDIDHQLLPDVLVLP
LLWLGLVLNSGGLLATLPDALWGAVIGYVCLWSVFWVFKVVTGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVF
AGLVLMRLRKSQASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=578858 HU759_RS05035 WP_275942351.1 1142362..1143228(-) (pilD) [Pseudomonas sp. OE 28.3]
TTGAGCCTGCTGCTGGGTGAACAACCCTGGGTCTTTGTCGGGATGGCGTTGGTGCTCGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGTGCGCGAATGGCGCGCCCAGGCCCAGGAAATACTCGGCCTGCCGG
CCGACCCCGCCGGCCCTGTCTACAACCTGATGCATCCCAACTCGTGCTGTGCGCATTGCAGCCAGCCGATTCGCCCCTGG
GAAAATATCCCGGTACTCAGCTACCTGCTACTCAAGGGGCGCTGCGCCCGCTGCCGCGAGTCTATCAGCGCGCGTTACCC
CTTTACCGAACTGGCCTGTGCGCTGCTCTCGGCCATGGTCGCCTGGCATTTTGGCTTCGGCTGGCAAGCTGGCGCAGTGA
TGCTGCTGAGTTGGGGCCTGCTGGCGATGAGCCTGATCGACATCGATCATCAACTGCTGCCGGATGTGCTGGTGTTGCCA
CTGCTGTGGCTGGGGCTGGTCCTCAATAGCGGCGGCTTGTTGGCGACGCTGCCCGATGCGCTGTGGGGCGCAGTCATAGG
CTATGTGTGCCTGTGGAGCGTGTTCTGGGTGTTCAAGGTGGTCACCGGCAAGGACGGCATGGGTTATGGCGATTTCAAGC
TATTGGCCCTGCTCGGTGCCTGGGGTGGTTGGCAGATCCTGCCGATGACGCTGCTGATAGCGTCGCTGCTGGGCGTGTTC
GCAGGCCTTGTCCTGATGCGTTTGCGCAAGTCCCAGGCATCGGTGCCGATGCCATTTGGCCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.079	96.528	0.493
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter baumannii D1279779	46.57	96.181	0.448
pilD	Acinetobacter nosocomialis M2	45.848	96.181	0.441
pilD	Neisseria gonorrhoeae MS11	48.062	89.583	0.431