Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KQY33_RS01990 Genome accession   NZ_CP076733
Coordinates   406575..407801 (-) Length   408 a.a.
NCBI ID   WP_284633963.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd2008     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401575..412801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS01965 (KQY33_01965) mutT 403356..403778 (-) 423 WP_068968360.1 8-oxo-dGTP diphosphatase MutT -
  KQY33_RS01970 (KQY33_01970) yacG 403887..404096 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KQY33_RS01975 (KQY33_01975) zapD 404105..404842 (-) 738 WP_284633960.1 cell division protein ZapD -
  KQY33_RS01980 (KQY33_01980) coaE 404913..405512 (-) 600 WP_284633961.1 dephospho-CoA kinase -
  KQY33_RS01985 (KQY33_01985) pilD 405514..406392 (-) 879 WP_106338474.1 A24 family peptidase Machinery gene
  KQY33_RS01990 (KQY33_01990) pilC 406575..407801 (-) 1227 WP_284633963.1 type II secretion system F family protein Machinery gene
  KQY33_RS01995 (KQY33_01995) pilB 407867..409558 (-) 1692 WP_284633964.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KQY33_RS02000 (KQY33_02000) pilA 409570..409971 (-) 402 WP_284633965.1 pilin Machinery gene
  KQY33_RS02005 (KQY33_02005) ampD 410359..410937 (+) 579 WP_068969016.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KQY33_RS02010 (KQY33_02010) pdhR 411297..412070 (+) 774 Protein_374 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45032.15 Da        Isoelectric Point: 10.0330

>NTDB_id=577804 KQY33_RS01990 WP_284633963.1 406575..407801(-) (pilC) [Photobacterium damselae strain Pdd2008]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRSQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMITAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=577804 KQY33_RS01990 WP_284633963.1 406575..407801(-) (pilC) [Photobacterium damselae strain Pdd2008]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGATCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGATAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCTTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATCCCCCTACTAACAG
GCCTACAGTCGGCTGGTAAAACCGCAGGAAACTTACATATAGAAGAGGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGGGAAGA
GTCCGGATCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAATGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

54.839

98.775

0.542
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Pseudomonas stutzeri DSM 10701

39.803

99.755

0.397
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

37.94

97.549

0.37