Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KRG72_RS08865 Genome accession   NZ_CP076703
Coordinates   1788763..1790022 (-) Length   419 a.a.
NCBI ID   WP_258255159.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783763..1795022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS08830 (KRG72_08835) - 1783822..1785396 (-) 1575 WP_258255150.1 DUF2079 domain-containing protein -
  KRG72_RS08835 - 1785439..1785567 (-) 129 WP_093815699.1 hypothetical protein -
  KRG72_RS08840 (KRG72_08840) - 1785683..1786000 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  KRG72_RS08845 (KRG72_08845) ruvX 1786033..1786452 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  KRG72_RS08850 (KRG72_08850) - 1786449..1786718 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  KRG72_RS08855 (KRG72_08855) spx 1786966..1787364 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  KRG72_RS08860 (KRG72_08860) recA 1787562..1788716 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  KRG72_RS08865 (KRG72_08865) cinA 1788763..1790022 (-) 1260 WP_258255159.1 competence/damage-inducible protein A Machinery gene
  KRG72_RS08870 (KRG72_08870) - 1790151..1791332 (-) 1182 WP_258255160.1 MFS transporter -
  KRG72_RS08875 (KRG72_08875) - 1791535..1792086 (-) 552 WP_258255161.1 DNA-3-methyladenine glycosylase I -
  KRG72_RS08880 (KRG72_08880) ruvA 1792116..1792709 (-) 594 WP_074869549.1 Holliday junction branch migration protein RuvA -
  KRG72_RS08885 (KRG72_08885) mutL 1792710..1794650 (-) 1941 WP_258255164.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45759.07 Da        Isoelectric Point: 4.9878

>NTDB_id=577490 KRG72_RS08865 WP_258255159.1 1788763..1790022(-) (cinA) [Streptococcus equinus strain S1]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSIIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLDEFFATRPQFTRTANNERQAQLIEGSTPLQNSTGLAVGGVIEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIDNQTDPTIAPYAKTGEVTLRLSTKADDIESAKAKLDQLEQK
ILSKKTLNSIPLENLLYGYGDDNSMARVVFDLLKKKHKTITAAESLTAGLFQSSIADFSGSSSVFNGGFVTYSIEEKSKM
LQIPLEELQEHGVVSHFTAEKMAEQSRKLTDADFGIGLTGVAGPDSLEGHPAGTVFIGIATREKVHSIRVLIGGRSRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=577490 KRG72_RS08865 WP_258255159.1 1788763..1790022(-) (cinA) [Streptococcus equinus strain S1]
ATGAAAGCTGAGATTATCGCTGTAGGAACAGAGATTTTAACAGGACAAATCACAAATACCAATGCGCAATTTTTATCTGA
AGAATTTGCCAAGTTAGGGATTGATGTCTTTTTCCAAACGGCAGTTGGGGACAATGAAGAGCGTCTTTTGTCTATCATTG
ATTTGGCAAGTAAGCGTAGCGATTTAGTTGTTCTCTGTGGTGGTTTAGGACCAACTGAGGATGATTTGACAAAGCAAACC
TTAGCAAAATATTTAGGGCGTAACCTGGTCTTTGACGAACAGGCAAGTAAACGTCTAGATGAGTTCTTTGCGACACGTCC
TCAATTTACAAGAACAGCTAACAATGAACGCCAAGCTCAACTGATTGAAGGTTCAACTCCTTTGCAAAATAGCACTGGTT
TGGCTGTAGGTGGAGTGATTGAAGTTGACGGCGTCACTTATGTTGTTCTTCCTGGCCCACCAAGTGAGCTTAAGCCCATG
GTCTGGGATTATTTAGTGCCTTTGTTATCTAGCGACCATAAGCAACTTTATTCACGTGTTTTGCGTTTCTTTGGCATTGG
AGAAAGCCAACTGGTAACTGTTTTATCAGATTTGATTGACAACCAAACCGATCCAACCATTGCGCCATATGCTAAGACAG
GTGAAGTAACGCTGCGTTTGTCAACGAAAGCAGACGACATTGAATCAGCTAAGGCAAAACTAGACCAGCTAGAGCAAAAA
ATTCTTTCTAAGAAGACTTTAAATAGCATTCCACTTGAGAATTTGCTTTATGGTTACGGTGATGACAATAGTATGGCGCG
TGTTGTTTTTGATTTGCTTAAGAAAAAACACAAGACTATCACAGCTGCAGAAAGTTTAACAGCAGGGCTATTTCAATCAA
GTATTGCAGACTTCTCAGGCTCTTCATCAGTCTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAATCAAAAATG
CTTCAGATTCCATTAGAAGAGTTGCAAGAACACGGGGTTGTTAGTCACTTTACAGCTGAGAAAATGGCTGAGCAATCTCG
CAAGTTAACAGATGCTGATTTTGGGATTGGATTGACAGGAGTTGCAGGACCAGATAGCTTAGAAGGTCACCCAGCGGGAA
CAGTTTTTATTGGTATTGCTACTAGAGAAAAAGTTCATTCTATTCGTGTTCTCATAGGTGGACGAAGCCGTTCAGATGTG
CGTCATATTGCATGTTTGTATGCATTTAACTTAGTACGTCAAGCTTTATTACAAGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)

Competence-damaged protein (CinA)

(263-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

72.076

100

0.721
  cinA Streptococcus mutans UA159

72.182

99.523

0.718
  cinA Streptococcus mitis NCTC 12261

71.122

100

0.711
  cinA Streptococcus pneumoniae Rx1

70.167

100

0.702
  cinA Streptococcus pneumoniae TIGR4

70.167

100

0.702
  cinA Streptococcus pneumoniae R6

70.167

100

0.702
  cinA Streptococcus pneumoniae D39

69.928

100

0.699
  cinA Streptococcus suis isolate S10

54.808

99.284

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

45.972

100

0.463