Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG43_RS04965 Genome accession   NZ_CP094175
Coordinates   1052182..1053357 (+) Length   391 a.a.
NCBI ID   WP_245029875.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047182..1058357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS04940 (MPG43_04940) - 1047465..1048361 (+) 897 WP_000697549.1 OriC activity response regulator -
  MPG43_RS04945 (MPG43_04945) - 1048677..1049453 (+) 777 Protein_963 5'-3' exonuclease -
  MPG43_RS04950 (MPG43_04950) - 1049521..1050771 (-) 1251 WP_245029874.1 outer membrane family protein -
  MPG43_RS04955 (MPG43_04955) - 1050938..1051804 (+) 867 WP_096392359.1 DnaJ C-terminal domain-containing protein -
  MPG43_RS04960 (MPG43_04960) - 1051814..1052185 (+) 372 WP_000333000.1 helix-turn-helix transcriptional regulator -
  MPG43_RS04965 (MPG43_04965) rarA 1052182..1053357 (+) 1176 WP_245029875.1 replication-associated recombination protein A Machinery gene
  MPG43_RS04970 (MPG43_04970) fur 1053517..1053969 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG43_RS04975 (MPG43_04975) - 1053989..1054486 (-) 498 WP_154414229.1 DUF2147 domain-containing protein -
  MPG43_RS04980 (MPG43_04980) - 1054483..1055019 (-) 537 WP_245029877.1 YhcH/YjgK/YiaL family protein -
  MPG43_RS04985 (MPG43_04985) fliY 1055048..1055911 (-) 864 WP_245029879.1 flagellar motor switch protein FliY -
  MPG43_RS04990 (MPG43_04990) fliM 1055915..1056979 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG43_RS04995 (MPG43_04995) - 1056972..1057748 (-) 777 WP_180428636.1 RNA polymerase sigma factor FliA -
  MPG43_RS05000 (MPG43_05000) - 1057726..1058040 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43801.36 Da        Isoelectric Point: 7.7775

>NTDB_id=577072 MPG43_RS04965 WP_245029875.1 1052182..1053357(+) (rarA) [Helicobacter pylori strain Hpfe063]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRLHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=577072 MPG43_RS04965 WP_245029875.1 1052182..1053357(+) (rarA) [Helicobacter pylori strain Hpfe063]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCTTGG
CTCAAATCATCGCTCACGCACTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAGGATCCTATCACTTTAGAAACGCTACAATCCTTACGGCTTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATCTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAAGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCCAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.74

100

0.402