Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CNZW441b_RS00145 Genome accession   NZ_CP076657
Coordinates   17763..18002 (-) Length   79 a.a.
NCBI ID   WP_131163249.1    Uniprot ID   A0A4Q9JVZ8
Organism   Campylobacter novaezeelandiae strain W441b     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12763..23002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS00100 (CNZW441b_0020) rplE 12788..13333 (+) 546 WP_131163240.1 50S ribosomal protein L5 -
  CNZW441b_RS00105 (CNZW441b_0021) - 13336..13521 (+) 186 WP_131163241.1 type Z 30S ribosomal protein S14 -
  CNZW441b_RS00110 (CNZW441b_0022) rpsH 13531..13926 (+) 396 WP_131163242.1 30S ribosomal protein S8 -
  CNZW441b_RS00115 (CNZW441b_0023) rplF 14000..14536 (+) 537 WP_131163243.1 50S ribosomal protein L6 -
  CNZW441b_RS00120 (CNZW441b_0024) rplR 14546..14902 (+) 357 WP_131163244.1 50S ribosomal protein L18 -
  CNZW441b_RS00125 (CNZW441b_0025) rpsE 14918..15361 (+) 444 WP_131163245.1 30S ribosomal protein S5 -
  CNZW441b_RS00130 (CNZW441b_0026) rplO 15366..15758 (+) 393 WP_131163246.1 50S ribosomal protein L15 -
  CNZW441b_RS00135 (CNZW441b_0027) secY 15758..17023 (+) 1266 WP_131163247.1 preprotein translocase subunit SecY -
  CNZW441b_RS00140 (CNZW441b_0028) - 17065..17631 (-) 567 WP_216681401.1 ribonuclease HII -
  CNZW441b_RS00145 (CNZW441b_0029) Cj0011c 17763..18002 (-) 240 WP_131163249.1 DUF655 domain-containing protein Machinery gene
  CNZW441b_RS00150 (CNZW441b_0030) - 18010..18657 (-) 648 WP_131163250.1 ferritin family protein -
  CNZW441b_RS00155 (CNZW441b_0031) - 18873..19784 (+) 912 WP_131186437.1 cytochrome-c peroxidase -
  CNZW441b_RS00160 (CNZW441b_0032) - 19768..21564 (+) 1797 WP_216681402.1 methyl-accepting chemotaxis protein -
  CNZW441b_RS00165 (CNZW441b_0033) dba 21606..21773 (+) 168 WP_131163253.1 disulfide bond formation protein Dba -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8858.51 Da        Isoelectric Point: 10.2483

>NTDB_id=577072 CNZW441b_RS00145 WP_131163249.1 17763..18002(-) (Cj0011c) [Campylobacter novaezeelandiae strain W441b]
MKKIVFLLFIFLGVLFAKININTASIEELKTLNGIGEAKAKAIIAYRKEQNFTSIEEIKKVNGIGEKIFQNIKDSISVN

Nucleotide


Download         Length: 240 bp        

>NTDB_id=577072 CNZW441b_RS00145 WP_131163249.1 17763..18002(-) (Cj0011c) [Campylobacter novaezeelandiae strain W441b]
ATGAAAAAGATTGTATTTTTATTATTTATTTTTTTAGGTGTGCTATTTGCTAAAATTAATATCAATACAGCAAGTATTGA
AGAGTTAAAAACCCTTAATGGCATAGGAGAAGCAAAAGCTAAAGCTATCATAGCTTATAGAAAAGAACAAAATTTTACCA
GTATAGAAGAAATAAAAAAAGTAAATGGCATAGGAGAAAAAATATTTCAAAATATTAAAGATTCTATTAGCGTTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9JVZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.538

98.734

0.608
  comEA Bacillus subtilis subsp. subtilis str. 168

58.73

79.747

0.468
  comE Neisseria gonorrhoeae MS11

43.902

100

0.456
  comE Neisseria gonorrhoeae MS11

43.902

100

0.456
  comE Neisseria gonorrhoeae MS11

43.902

100

0.456
  comE Neisseria gonorrhoeae MS11

43.902

100

0.456
  comEA Latilactobacillus sakei subsp. sakei 23K

53.125

81.013

0.43
  comEA Lactococcus lactis subsp. cremoris KW2

46.875

81.013

0.38
  comEA/celA/cilE Streptococcus mitis SK321

46.032

79.747

0.367
  comEA Vibrio cholerae C6706

52.727

69.62

0.367
  comEA Vibrio cholerae strain A1552

52.727

69.62

0.367
  comE1/comEA Haemophilus influenzae Rd KW20

43.939

83.544

0.367