Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KMZ14_RS01275 Genome accession   NZ_CP076603
Coordinates   267002..268231 (-) Length   409 a.a.
NCBI ID   WP_004810078.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262002..273231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01250 (KMZ14_01250) - 263375..263691 (+) 317 Protein_237 pyrimidine/purine nucleoside phosphorylase -
  KMZ14_RS01255 (KMZ14_01255) rlmB 263844..264593 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KMZ14_RS01260 (KMZ14_01260) - 264600..265523 (+) 924 WP_081405839.1 DMT family transporter -
  KMZ14_RS01265 (KMZ14_01265) coaE 265544..266140 (-) 597 WP_273798376.1 dephospho-CoA kinase -
  KMZ14_RS01270 (KMZ14_01270) pilD 266142..267002 (-) 861 WP_273798377.1 prepilin peptidase Machinery gene
  KMZ14_RS01275 (KMZ14_01275) pilC 267002..268231 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  KMZ14_RS01280 (KMZ14_01280) pilB 268263..269972 (-) 1710 WP_273798378.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KMZ14_RS01285 (KMZ14_01285) tpiA 270255..271046 (+) 792 WP_163164692.1 triose-phosphate isomerase -
  KMZ14_RS01290 (KMZ14_01290) secG 271060..271389 (+) 330 WP_273798379.1 preprotein translocase subunit SecG -
  KMZ14_RS01320 (KMZ14_01320) rimP 272450..272974 (+) 525 WP_004810072.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44984.45 Da        Isoelectric Point: 9.9331

>NTDB_id=576578 KMZ14_RS01275 WP_004810078.1 267002..268231(-) (pilC) [Acinetobacter schindleri strain MCDA01]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=576578 KMZ14_RS01275 WP_004810078.1 267002..268231(-) (pilC) [Acinetobacter schindleri strain MCDA01]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACTATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCGATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
TGGTGATCTGGTTTATAAAGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408