NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KMZ14_RS01270	Genome accession	NZ_CP076603
Coordinates	266142..267002 (-)	Length	286 a.a.
NCBI ID	WP_273798377.1	Uniprot ID	-
Organism	Acinetobacter schindleri strain MCDA01
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 261142..272002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KMZ14_RS01245 (KMZ14_01245)	recN	261295..262956 (-)	1662	WP_273798375.1	DNA repair protein RecN	-
KMZ14_RS01250 (KMZ14_01250)	-	263375..263691 (+)	317	Protein_237	pyrimidine/purine nucleoside phosphorylase	-
KMZ14_RS01255 (KMZ14_01255)	rlmB	263844..264593 (+)	750	WP_004810085.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KMZ14_RS01260 (KMZ14_01260)	-	264600..265523 (+)	924	WP_081405839.1	DMT family transporter	-
KMZ14_RS01265 (KMZ14_01265)	coaE	265544..266140 (-)	597	WP_273798376.1	dephospho-CoA kinase	-
KMZ14_RS01270 (KMZ14_01270)	pilD	266142..267002 (-)	861	WP_273798377.1	prepilin peptidase	Machinery gene
KMZ14_RS01275 (KMZ14_01275)	pilC	267002..268231 (-)	1230	WP_004810078.1	type II secretion system F family protein	Machinery gene
KMZ14_RS01280 (KMZ14_01280)	pilB	268263..269972 (-)	1710	WP_273798378.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KMZ14_RS01285 (KMZ14_01285)	tpiA	270255..271046 (+)	792	WP_163164692.1	triose-phosphate isomerase	-
KMZ14_RS01290 (KMZ14_01290)	secG	271060..271389 (+)	330	WP_273798379.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31982.20 Da Isoelectric Point: 8.0564

                                >NTDB_id=576577 KMZ14_RS01270 WP_273798377.1 266142..267002(-) (pilD) [Acinetobacter schindleri strain MCDA01]

MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTP

IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLVVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=576577 KMZ14_RS01270 WP_273798377.1 266142..267002(-) (pilD) [Acinetobacter schindleri strain MCDA01]

ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG

CAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTTTAC

ACCCTGATCAACCGATCATTGATGAAAGCAAGCTTACATTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACACCA

ATTCGCTGGTATCAAAATATCCCCGTGATCAGCTGGTTAGCCTTGCGTGGTAAATGCGCTAACTGTCAAAATCCAATTAG

TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTTGGTCCTACAATACAAA

TGTTGTTCGGTCTGGTGCTGACTTATATTCTGATTGCATTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC

TATACCCTTCCGCTTGCAGCTTTAGGCTTAGGGGTAAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG

TTATATCATCGGCTTCCTGTGTTTATGGGTCGTGTACTACCTGTTTAAAATAGTAACTGGTAAAGAAGGCATGGGTTATG

GTGATTTTAAATTGCTGGCTGCACTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAGTTGTATTATTGTCATCACTC

GTCGGTGCAATCATTGGCATTATCCTGCTAAAAGTGCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCCTATATTGCCAT

TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	81.053	99.65	0.808
pilD	Acinetobacter baumannii D1279779	80.702	99.65	0.804
pilD	Vibrio campbellii strain DS40M4	52.128	98.601	0.514
pilD	Vibrio cholerae strain A1552	54.511	93.007	0.507
pilD	Neisseria gonorrhoeae MS11	47.253	95.455	0.451

Detailed information NTG0576577