Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KM146_RS18270 Genome accession   NZ_CP076287
Coordinates   2265734..2266957 (+) Length   407 a.a.
NCBI ID   WP_017635918.1    Uniprot ID   A0AAW9BMM9
Organism   Vibrio alginolyticus strain ZJ-0     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2260734..2271957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS18250 (KM146_18250) ampD 2261752..2262303 (-) 552 WP_005379985.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KM146_RS18255 (KM146_18255) nadC 2262396..2263283 (+) 888 WP_005379983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KM146_RS18260 (KM146_18260) pilA 2263546..2264019 (+) 474 WP_065274839.1 pilin Machinery gene
  KM146_RS18265 (KM146_18265) pilB 2264025..2265710 (+) 1686 WP_065274840.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM146_RS18270 (KM146_18270) pilC 2265734..2266957 (+) 1224 WP_017635918.1 type II secretion system F family protein Machinery gene
  KM146_RS18275 (KM146_18275) pilD 2267022..2267891 (+) 870 WP_064354291.1 prepilin peptidase Machinery gene
  KM146_RS18280 (KM146_18280) coaE 2267892..2268506 (+) 615 WP_065274841.1 dephospho-CoA kinase -
  KM146_RS18285 (KM146_18285) zapD 2268534..2269274 (+) 741 WP_005373086.1 cell division protein ZapD -
  KM146_RS18290 (KM146_18290) yacG 2269433..2269627 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  KM146_RS18295 (KM146_18295) rplS 2269940..2270293 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  KM146_RS18300 (KM146_18300) trmD 2270335..2271096 (-) 762 WP_005385420.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KM146_RS18305 (KM146_18305) rimM 2271124..2271672 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  KM146_RS18310 (KM146_18310) rpsP 2271702..2271950 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45313.50 Da        Isoelectric Point: 10.3992

>NTDB_id=574406 KM146_RS18270 WP_017635918.1 2265734..2266957(+) (pilC) [Vibrio alginolyticus strain ZJ-0]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=574406 KM146_RS18270 WP_017635918.1 2265734..2266957(+) (pilC) [Vibrio alginolyticus strain ZJ-0]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACGGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TTTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGCCAAATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGGACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGATCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCAGAAGTATTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCACTGATCTACCCAGCTATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCATGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCAGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTCCTCGGGCCCGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACGAGCTTTACAGCGGGCATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCTATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGCAACTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACAATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCACTAATTATCGTTTTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.775

100

0.74
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398