Detailed information NTG0574407

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KM146_RS18275
• Genome accession: NZ_CP076287
• Coordinates: 2267022..2267891 (+)
• Length: 289 a.a.
• NCBI ID: WP_064354291.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ZJ-0
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2262022..2272891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM146_RS18255 (KM146_18255)	nadC	2262396..2263283 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
KM146_RS18260 (KM146_18260)	pilA	2263546..2264019 (+)	474	WP_065274839.1	pilin	Machinery gene
KM146_RS18265 (KM146_18265)	pilB	2264025..2265710 (+)	1686	WP_065274840.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KM146_RS18270 (KM146_18270)	pilC	2265734..2266957 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
KM146_RS18275 (KM146_18275)	pilD	2267022..2267891 (+)	870	WP_064354291.1	prepilin peptidase	Machinery gene
KM146_RS18280 (KM146_18280)	coaE	2267892..2268506 (+)	615	WP_065274841.1	dephospho-CoA kinase	-
KM146_RS18285 (KM146_18285)	zapD	2268534..2269274 (+)	741	WP_005373086.1	cell division protein ZapD	-
KM146_RS18290 (KM146_18290)	yacG	2269433..2269627 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
KM146_RS18295 (KM146_18295)	rplS	2269940..2270293 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
KM146_RS18300 (KM146_18300)	trmD	2270335..2271096 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
KM146_RS18305 (KM146_18305)	rimM	2271124..2271672 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
KM146_RS18310 (KM146_18310)	rpsP	2271702..2271950 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0197

>NTDB_id=574407 KM146_RS18275 WP_064354291.1 2267022..2267891(+) (pilD) [Vibrio alginolyticus strain ZJ-0]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=574407 KM146_RS18275 WP_064354291.1 2267022..2267891(+) (pilD) [Vibrio alginolyticus strain ZJ-0]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCAATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46