Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KM547_RS14585 Genome accession   NZ_CP076251
Coordinates   3342121..3343380 (+) Length   419 a.a.
NCBI ID   WP_053838008.1    Uniprot ID   A0A0K2ZN06
Organism   Xanthomonas translucens pv. phlei strain LMG 730     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337121..3348380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM547_RS14550 (KM547_14490) - 3337138..3337434 (+) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM547_RS14555 (KM547_14495) - 3337437..3337730 (+) 294 WP_009580422.1 addiction module antidote protein -
  KM547_RS14560 (KM547_14500) pilB 3337758..3339494 (-) 1737 WP_053838004.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM547_RS14565 (KM547_14505) - 3339701..3339991 (+) 291 WP_009580418.1 nucleotidyltransferase family protein -
  KM547_RS14570 (KM547_14510) - 3339988..3340359 (+) 372 WP_053838005.1 DUF86 domain-containing protein -
  KM547_RS14575 (KM547_14515) - 3340495..3341052 (+) 558 WP_053838006.1 transposase -
  KM547_RS14580 (KM547_14520) - 3341286..3341735 (-) 450 WP_053838007.1 pilin -
  KM547_RS14585 (KM547_14525) pilC 3342121..3343380 (+) 1260 WP_053838008.1 type II secretion system F family protein Machinery gene
  KM547_RS14590 (KM547_14530) - 3343387..3344250 (+) 864 WP_053833732.1 prepilin peptidase -
  KM547_RS14595 (KM547_14535) coaE 3344264..3344884 (+) 621 WP_053838009.1 dephospho-CoA kinase -
  KM547_RS14600 (KM547_14540) - 3345006..3346340 (-) 1335 WP_053838010.1 sensor histidine kinase -
  KM547_RS14605 (KM547_14545) - 3346333..3347010 (-) 678 WP_003466405.1 response regulator transcription factor -
  KM547_RS14610 (KM547_14550) - 3347109..3347303 (-) 195 WP_237651082.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45478.59 Da        Isoelectric Point: 10.1825

>NTDB_id=574046 KM547_RS14585 WP_053838008.1 3342121..3343380(+) (pilC) [Xanthomonas translucens pv. phlei strain LMG 730]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=574046 KM547_RS14585 WP_053838008.1 3342121..3343380(+) (pilC) [Xanthomonas translucens pv. phlei strain LMG 730]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGTGTCCCCATCGTGGGATCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGACAGGTCCGCACGGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTCCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCACGCACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGATGTGTCGGTGGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTATTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTAGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZN06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.245

97.375

0.489
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilG Neisseria meningitidis 44/76-A

42.105

95.227

0.401
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37