Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KME82_RS20110 Genome accession   NZ_CP076103
Coordinates   4834868..4836124 (+) Length   418 a.a.
NCBI ID   WP_215495585.1    Uniprot ID   -
Organism   Lysobacter capsici strain NF87_2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4829868..4841124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME82_RS20090 (KME82_20090) - 4830203..4831048 (-) 846 WP_215495581.1 hypothetical protein -
  KME82_RS20095 (KME82_20095) - 4831045..4832097 (-) 1053 WP_215495582.1 UDP-N-acetylglucosamine 2-epimerase -
  KME82_RS20100 (KME82_20100) - 4832150..4833001 (-) 852 WP_215495583.1 glycosyltransferase family 2 protein -
  KME82_RS20105 (KME82_20105) pilB 4833137..4834864 (+) 1728 WP_215495584.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KME82_RS20110 (KME82_20110) pilC 4834868..4836124 (+) 1257 WP_215495585.1 type II secretion system F family protein Machinery gene
  KME82_RS20115 (KME82_20115) - 4836146..4837033 (+) 888 WP_215495586.1 A24 family peptidase -
  KME82_RS20120 (KME82_20120) coaE 4837037..4837657 (+) 621 WP_215495587.1 dephospho-CoA kinase -
  KME82_RS20125 (KME82_20125) - 4837759..4838742 (-) 984 WP_252255846.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45395.73 Da        Isoelectric Point: 10.3304

>NTDB_id=571846 KME82_RS20110 WP_215495585.1 4834868..4836124(+) (pilC) [Lysobacter capsici strain NF87_2]
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIKWWWA
VLILVVGAAVGFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=571846 KME82_RS20110 WP_215495585.1 4834868..4836124(+) (pilC) [Lysobacter capsici strain NF87_2]
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCGCCGGCAAGCGCATCACCCCCGGCGAA
ATCGCCATCTTCAGTCGCCAGATCGCGACGATGATGAAATCGGGCGTGCCGATCGTGACCTCGCTGGAGATTATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTTCGCGCCGACCTGGAAAGCGGCTCGTCGCTGCACGAGG
CCATGTCCAAGCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
CGCCACGGTCGTGGCCGTGGCGATCCTGGTGAGCGCCATCCTGCTGATCTTCGTGGTCCCGCAGTTCCAGGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGTGCCGCGGTCGGCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCACTTCCTCGA
TCGGGCGATGCTCAAGATCCCGGTGGTCGGCCAGATCCTGCACAACGCCGCGATCGCCCGCTTCGCGCGCACCCTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGACACCGTGGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTGGCCGAGTTCTACG
AACAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGGTCATCCTCGGCGTCATCGTC
GGCGGCATGGTCATCGCCATGTATCTGCCGATCTTCAAACTTGCTGCGACCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.423

94.976

0.536
  pilC Legionella pneumophila strain ERS1305867

55.198

96.651

0.533
  pilC Acinetobacter baylyi ADP1

52.217

97.129

0.507
  pilC Acinetobacter baumannii D1279779

51.478

97.129

0.5
  pilG Neisseria gonorrhoeae MS11

43.672

96.411

0.421
  pilG Neisseria meningitidis 44/76-A

43.176

96.411

0.416
  pilC Vibrio campbellii strain DS40M4

40.796

96.172

0.392
  pilC Vibrio cholerae strain A1552

40

95.694

0.383
  pilC Thermus thermophilus HB27

36.967

100

0.373