Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KKZ03_RS17620 Genome accession   NZ_CP076024
Coordinates   3890659..3891879 (+) Length   406 a.a.
NCBI ID   WP_243218089.1    Uniprot ID   -
Organism   Methylobacter sp. S3L5C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3885659..3896879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ03_RS17615 (KKZ03_17535) pilB 3888944..3890656 (+) 1713 WP_243221668.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KKZ03_RS17620 (KKZ03_17540) pilC 3890659..3891879 (+) 1221 WP_243218089.1 type II secretion system F family protein Machinery gene
  KKZ03_RS17625 (KKZ03_17545) pilD 3891949..3892830 (+) 882 WP_243218090.1 A24 family peptidase Machinery gene
  KKZ03_RS17630 (KKZ03_17550) coaE 3892835..3893452 (+) 618 WP_243218091.1 dephospho-CoA kinase -
  KKZ03_RS17635 (KKZ03_17555) zapD 3893445..3894215 (+) 771 WP_243218092.1 cell division protein ZapD -
  KKZ03_RS17640 (KKZ03_17560) yacG 3894215..3894421 (+) 207 WP_243218093.1 DNA gyrase inhibitor YacG -
  KKZ03_RS17645 (KKZ03_17565) - 3894502..3895062 (-) 561 WP_243218094.1 hypothetical protein -
  KKZ03_RS17650 (KKZ03_17570) - 3895066..3895590 (-) 525 WP_243218095.1 hypothetical protein -
  KKZ03_RS17655 (KKZ03_17575) - 3895763..3896239 (-) 477 WP_243218096.1 peroxiredoxin -
  KKZ03_RS17660 (KKZ03_17580) - 3896248..3896778 (-) 531 WP_243218097.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45049.65 Da        Isoelectric Point: 9.8116

>NTDB_id=571358 KKZ03_RS17620 WP_243218089.1 3890659..3891879(+) (pilC) [Methylobacter sp. S3L5C]
MADPVEQLDFIWQGVDKNRKKTNGIIAAKNELIAKTELRRQGYRVTKIKKKSKPFFSPRLKKITPADIAIFARQLATMLG
AGIPLVQSFDIVGKGHENPSMQNMLLSVKADIEAGDTLAEALKKKPLYFDELFCNLVDAGEQAGVLETLLDKIATYKEKT
ESMKKKIKKALGYPIAVIVVAFIVTAILLLFVVPVFEDMFKSFGADLPAFTRMVVNMSQWMKEWWWILLGIIIIVIYVFG
YFKKRSRPFNHFLDKTLLKVPVVGMIINKSAIARFARTLSTMSAAGVPLVDALQSVSGACGNIIYAEAVLKMREEVATGQ
RLQVAMLQTKLFPHMVQQMVAIGEESGSMDAMLAKVADFFEEEVDNLVDNLSSLMEPIIMVILGTLIGGLVVAMYLPIFK
MGAAVS

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=571358 KKZ03_RS17620 WP_243218089.1 3890659..3891879(+) (pilC) [Methylobacter sp. S3L5C]
ATGGCAGATCCTGTTGAGCAACTTGATTTTATCTGGCAAGGCGTCGATAAAAACAGAAAAAAAACCAATGGAATTATCGC
CGCTAAAAATGAGCTGATAGCAAAAACCGAATTACGACGACAAGGCTATCGCGTCACTAAAATAAAGAAAAAATCCAAGC
CGTTTTTTAGCCCACGGTTAAAAAAAATTACCCCTGCGGATATCGCCATTTTCGCGAGGCAGTTAGCGACTATGCTGGGT
GCAGGTATACCGCTGGTTCAATCCTTTGATATTGTCGGCAAAGGCCATGAAAACCCCAGCATGCAAAATATGCTGTTAAG
CGTAAAAGCGGATATTGAAGCCGGTGATACCCTGGCGGAAGCGCTAAAGAAAAAACCTCTGTATTTTGATGAATTATTTT
GTAATCTGGTCGATGCCGGCGAGCAAGCCGGGGTACTGGAAACACTGCTGGATAAAATTGCGACTTACAAAGAAAAAACC
GAGTCCATGAAGAAAAAAATCAAAAAAGCACTGGGCTACCCTATTGCCGTAATCGTGGTCGCTTTTATTGTTACCGCTAT
TCTTCTGTTGTTTGTCGTACCGGTATTTGAAGACATGTTTAAGAGTTTTGGTGCCGATTTACCGGCGTTTACCCGCATGG
TTGTCAATATGTCCCAATGGATGAAAGAATGGTGGTGGATTTTACTTGGCATTATTATTATTGTTATTTATGTGTTTGGT
TATTTTAAAAAACGCTCACGGCCCTTTAATCACTTTTTGGATAAAACCTTACTAAAAGTGCCTGTAGTCGGTATGATTAT
CAACAAGTCCGCGATTGCCCGCTTTGCCAGAACCTTATCAACCATGTCTGCGGCAGGCGTGCCTTTGGTAGATGCGTTAC
AATCAGTCTCTGGCGCTTGTGGTAATATTATTTACGCCGAAGCGGTATTAAAAATGCGCGAAGAAGTCGCAACCGGCCAA
CGACTGCAGGTTGCCATGCTGCAAACCAAACTTTTTCCACATATGGTGCAGCAGATGGTTGCTATCGGTGAAGAGTCCGG
CTCAATGGACGCAATGCTGGCTAAAGTCGCCGATTTTTTCGAAGAAGAAGTGGATAATCTCGTCGACAACTTAAGCAGCT
TAATGGAACCGATTATTATGGTTATTTTAGGCACTCTGATTGGTGGTTTGGTTGTTGCCATGTATTTACCCATTTTCAAA
ATGGGTGCGGCTGTCAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.558

98.03

0.603
  pilC Acinetobacter baumannii D1279779

57.179

97.783

0.559
  pilC Acinetobacter baylyi ADP1

55.416

97.783

0.542
  pilC Pseudomonas stutzeri DSM 10701

54.545

97.537

0.532
  pilG Neisseria meningitidis 44/76-A

46.633

98.768

0.461
  pilG Neisseria gonorrhoeae MS11

46.633

98.768

0.461
  pilC Vibrio campbellii strain DS40M4

41.117

97.044

0.399
  pilC Vibrio cholerae strain A1552

39.949

96.798

0.387