Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KKZ03_RS17625 Genome accession   NZ_CP076024
Coordinates   3891949..3892830 (+) Length   293 a.a.
NCBI ID   WP_243218090.1    Uniprot ID   -
Organism   Methylobacter sp. S3L5C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3886949..3897830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ03_RS17615 (KKZ03_17535) pilB 3888944..3890656 (+) 1713 WP_243221668.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KKZ03_RS17620 (KKZ03_17540) pilC 3890659..3891879 (+) 1221 WP_243218089.1 type II secretion system F family protein Machinery gene
  KKZ03_RS17625 (KKZ03_17545) pilD 3891949..3892830 (+) 882 WP_243218090.1 A24 family peptidase Machinery gene
  KKZ03_RS17630 (KKZ03_17550) coaE 3892835..3893452 (+) 618 WP_243218091.1 dephospho-CoA kinase -
  KKZ03_RS17635 (KKZ03_17555) zapD 3893445..3894215 (+) 771 WP_243218092.1 cell division protein ZapD -
  KKZ03_RS17640 (KKZ03_17560) yacG 3894215..3894421 (+) 207 WP_243218093.1 DNA gyrase inhibitor YacG -
  KKZ03_RS17645 (KKZ03_17565) - 3894502..3895062 (-) 561 WP_243218094.1 hypothetical protein -
  KKZ03_RS17650 (KKZ03_17570) - 3895066..3895590 (-) 525 WP_243218095.1 hypothetical protein -
  KKZ03_RS17655 (KKZ03_17575) - 3895763..3896239 (-) 477 WP_243218096.1 peroxiredoxin -
  KKZ03_RS17660 (KKZ03_17580) - 3896248..3896778 (-) 531 WP_243218097.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32724.89 Da        Isoelectric Point: 7.3628

>NTDB_id=571359 KKZ03_RS17625 WP_243218090.1 3891949..3892830(+) (pilD) [Methylobacter sp. S3L5C]
MIQQLHILLTTPYLLVTLASLIGLIVGSFLNVVIYRLPVMMQQNWRKECTEYLQIDTIETNTRQEPFNLSLPLSRCPHCK
TPIKPYQNIPVISYLFLKGRCATCSQPISLRYPLIEALTALTSAIVAWHFGYSPQTVFALVLTWSLVALSFIDIDHQLLP
DNITLPLLWLGLLLSLFGFFTDTHASIIGTIVGYTSLWVVFHVFKLATGKEGMGFGDFKLLALFGAWLGWQCLPLIILLS
SLVGAIIGVSLIIFAKRDHTIPIPFGPYLALAGWLALLWGDDINQFYLTTAGL

Nucleotide


Download         Length: 882 bp        

>NTDB_id=571359 KKZ03_RS17625 WP_243218090.1 3891949..3892830(+) (pilD) [Methylobacter sp. S3L5C]
ATGATACAGCAGCTACATATCTTATTAACAACCCCTTATTTACTGGTAACCTTGGCGAGTCTTATTGGATTAATAGTCGG
TAGTTTTCTCAATGTAGTTATTTATCGATTACCGGTAATGATGCAACAAAACTGGCGTAAGGAGTGCACTGAATATTTGC
AAATAGACACTATTGAAACAAATACACGGCAAGAACCCTTTAATCTGTCTTTGCCCTTATCACGCTGCCCTCATTGCAAA
ACACCGATCAAGCCTTACCAAAACATCCCCGTCATCAGTTACCTTTTTTTAAAGGGTCGCTGTGCAACTTGTAGCCAGCC
AATTTCTTTACGCTATCCGCTTATAGAAGCGCTCACTGCCCTAACATCGGCCATAGTGGCCTGGCATTTTGGCTATTCTC
CGCAAACTGTTTTTGCCTTGGTACTAACCTGGTCGCTGGTTGCCCTGAGCTTTATTGATATAGACCACCAGTTATTACCC
GATAACATAACACTGCCCTTACTTTGGCTGGGCTTGTTGTTGAGCCTGTTTGGTTTTTTTACTGACACGCATGCCAGTAT
TATAGGTACCATAGTCGGCTATACAAGTCTTTGGGTCGTCTTTCATGTATTTAAACTGGCAACCGGCAAGGAGGGCATGG
GCTTTGGTGATTTTAAATTACTGGCTTTATTTGGTGCGTGGCTGGGTTGGCAATGTTTACCCCTTATTATTTTATTATCG
TCACTGGTAGGCGCAATTATTGGCGTATCCCTGATTATTTTTGCCAAACGCGATCATACTATCCCTATTCCATTTGGTCC
CTATTTGGCACTCGCCGGATGGTTGGCACTATTGTGGGGTGACGATATCAATCAGTTTTATTTAACGACAGCAGGTTTGT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-249)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.214

95.563

0.509
  pilD Acinetobacter baumannii D1279779

53.214

95.563

0.509
  pilD Acinetobacter nosocomialis M2

53.214

95.563

0.509
  pilD Vibrio campbellii strain DS40M4

51.916

97.952

0.509
  pilD Neisseria gonorrhoeae MS11

48.134

91.468

0.44