Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KHS93_RS15075 Genome accession   NZ_CP075547
Coordinates   3067716..3068360 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062716..3073360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS15040 (KHS93_15040) - 3063901..3064332 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  KHS93_RS15045 (KHS93_15045) - 3064332..3064673 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  KHS93_RS15050 (KHS93_15050) - 3064666..3066147 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  KHS93_RS15055 (KHS93_15055) - 3066153..3066629 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  KHS93_RS15060 (KHS93_15060) - 3066629..3066913 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  KHS93_RS15065 (KHS93_15065) mnhG 3066897..3067271 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  KHS93_RS15070 (KHS93_15070) - 3067311..3067694 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  KHS93_RS15075 (KHS93_15075) comA 3067716..3068360 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  KHS93_RS15080 (KHS93_15080) - 3068441..3070744 (-) 2304 Protein_2928 histidine kinase -
  KHS93_RS15085 (KHS93_15085) comX 3070764..3070943 (-) 180 WP_306383677.1 competence pheromone ComX -
  KHS93_RS15090 (KHS93_15090) comQ 3070897..3071883 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  KHS93_RS15095 (KHS93_15095) degQ 3072014..3072154 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KHS93_RS15100 (KHS93_15100) - 3072620..3072961 (+) 342 WP_003152040.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=569478 KHS93_RS15075 WP_003152052.1 3067716..3068360(-) (comA) [Bacillus amyloliquefaciens strain SN16-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=569478 KHS93_RS15075 WP_003152052.1 3067716..3068360(-) (comA) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864