Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KJA71_RS16900 Genome accession   NZ_CP075325
Coordinates   3872050..3873306 (+) Length   418 a.a.
NCBI ID   WP_040107659.1    Uniprot ID   A0AAI7ZHE3
Organism   Xanthomonas citri pv. citri strain GD82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3867050..3878306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJA71_RS16875 (KJA71_16875) - 3867977..3868144 (-) 168 WP_015463523.1 hypothetical protein -
  KJA71_RS16880 (KJA71_16880) pilB 3868276..3868395 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  KJA71_RS16885 (KJA71_16885) pilB 3868889..3870625 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KJA71_RS16890 (KJA71_16890) - 3870689..3871144 (-) 456 WP_015463526.1 pilin -
  KJA71_RS16895 (KJA71_16895) - 3871254..3871694 (-) 441 WP_011052127.1 pilin -
  KJA71_RS16900 (KJA71_16900) pilC 3872050..3873306 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  KJA71_RS16905 (KJA71_16905) - 3873313..3874176 (+) 864 WP_003491180.1 A24 family peptidase -
  KJA71_RS16910 (KJA71_16910) coaE 3874190..3874798 (+) 609 WP_011052129.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45374.73 Da        Isoelectric Point: 10.2788

>NTDB_id=568808 KJA71_RS16900 WP_040107659.1 3872050..3873306(+) (pilC) [Xanthomonas citri pv. citri strain GD82]
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=568808 KJA71_RS16900 WP_040107659.1 3872050..3873306(+) (pilC) [Xanthomonas citri pv. citri strain GD82]
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGCGCCGAGTTACGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCGGAAAGAAAGTTTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTCGGCGCGCTGGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGAAGGGGGGGCATCGCTCTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGGGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTTCCCCAATTTGAAGATGTCTTCAAGG
GCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAACATGGCATGGACCG
CCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGCAAGATTCGCCCGGACGACGGCGGTGA
CCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGTAATTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATGAAACAGGTCAACCTGTTTCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.086

96.89

0.514
  pilC Acinetobacter baylyi ADP1

51.843

97.368

0.505
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

42.963

96.89

0.416
  pilG Neisseria gonorrhoeae MS11

42.822

96.651

0.414
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.95

96.411

0.385