Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI608_RS03470 Genome accession   NZ_CP075192
Coordinates   733518..734744 (-) Length   408 a.a.
NCBI ID   WP_226450635.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 132     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728518..739744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI608_RS03435 (KI608_03440) nudB 728657..729109 (-) 453 WP_226450629.1 dihydroneopterin triphosphate diphosphatase -
  KI608_RS03440 (KI608_03445) - 729106..729534 (-) 429 WP_226450630.1 barstar family protein -
  KI608_RS03445 (KI608_03450) - 729545..729904 (-) 360 WP_226450631.1 ribonuclease domain-containing protein -
  KI608_RS03450 (KI608_03455) aspS 729911..731710 (-) 1800 WP_226450632.1 aspartate--tRNA ligase -
  KI608_RS03455 (KI608_03460) - 731728..732342 (-) 615 WP_226451833.1 DUF502 domain-containing protein -
  KI608_RS03460 (KI608_03465) - 732342..732593 (-) 252 WP_226450633.1 zinc ribbon domain-containing protein -
  KI608_RS03465 (KI608_03470) pilD 732664..733518 (-) 855 WP_226450634.1 A24 family peptidase Machinery gene
  KI608_RS03470 (KI608_03475) pilC 733518..734744 (-) 1227 WP_226450635.1 type II secretion system F family protein Machinery gene
  KI608_RS03475 (KI608_03480) pilB 734760..736475 (-) 1716 WP_226450636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI608_RS03480 (KI608_03485) - 736555..737739 (-) 1185 WP_404826784.1 HlyC/CorC family transporter -
  KI608_RS03485 (KI608_03490) - 737830..738669 (-) 840 WP_226450638.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44308.03 Da        Isoelectric Point: 10.0042

>NTDB_id=568596 KI608_RS03470 WP_226450635.1 733518..734744(-) (pilC) [Ferribacterium limneticum strain 132]
MATAARPKASAVKESTFQWEGKNKDGKTVRGEMRAASESVVQTTLRRQGITNTKVKKIRFKSGGKITDKDISLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKFPLQFDALYCNLVSAGEQAGILDTLLDRLASYK
EKILAIKSKIKSALFYPVAIIVVAFIITAVIMIFVIPAFKDVFKSFGADLPAPTLLVIAISDFFVAYWWAMFGAIGGGLY
AFLESWKRSEKVQMAMDRFLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVGGAAGNNVYKVATRQIQSEVS
TGTSLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568596 KI608_RS03470 WP_226450635.1 733518..734744(-) (pilC) [Ferribacterium limneticum strain 132]
ATGGCTACCGCCGCAAGACCGAAAGCCTCGGCAGTCAAGGAAAGCACCTTCCAGTGGGAAGGAAAAAACAAGGACGGCAA
GACCGTCCGCGGTGAAATGCGCGCCGCCAGTGAATCGGTCGTCCAGACCACCTTACGCCGGCAAGGAATCACCAATACCA
AGGTTAAAAAAATCCGCTTCAAGAGCGGTGGAAAAATTACCGATAAAGATATTTCGCTATTTACTCGGCAACTTGCCACC
ATGATGAAGTCAGGCGTGCCGCTGTTGCAGTCCTTCGATATCGTCGGTCGCGGCCACTCAAACCCAGCTGTTGGAAAGCT
CTTGCTCGATATCAAGGCCGATGTCGAAACCGGCAGTTCGCTATCCCAGGCATTCCGCAAATTCCCGCTGCAATTTGATG
CACTCTATTGCAACCTCGTCTCTGCCGGCGAACAAGCCGGCATTCTTGACACGCTGCTTGACCGCCTTGCCAGCTACAAG
GAAAAAATTCTGGCGATCAAGAGCAAGATCAAGTCGGCATTGTTTTACCCGGTAGCAATCATCGTGGTTGCCTTCATCAT
CACTGCGGTGATCATGATCTTCGTCATTCCGGCCTTCAAGGATGTTTTCAAGAGCTTTGGCGCTGACCTGCCAGCACCAA
CACTACTGGTCATAGCTATCTCAGATTTCTTTGTCGCATACTGGTGGGCGATGTTCGGCGCAATTGGCGGTGGACTCTAT
GCCTTCCTTGAAAGCTGGAAGCGTTCGGAAAAGGTCCAGATGGCGATGGACAGATTCCTTCTTCGCGTCCCCGTTTTCGG
CGACATTGTCCGAAAGTCAGTGATTGCCCGATGGACCAGAACGCTATCCACCATGTTTGCAGCAGGTGTTCCGCTCGTCG
AATCTCTAGAATCCGTTGGCGGCGCAGCCGGAAACAACGTCTACAAAGTCGCCACCCGGCAAATCCAGAGCGAAGTCTCA
ACCGGCACCAGCCTGACCACGGCCATGCAAAACGTAAATCTCTTTCCGAATATGGTCACGCAAATGGTCGCCATTGGCGA
GGAGTCCGGCGCCCTAGATTCCATGCTATCCAAGGTAGCCGACTTTTTCGAGGCTGAGGTCGATGATGCGGTCGAAGCCA
TGTCCAGCCTGATGGAACCAATCATCATGGTCGTACTTGGCACCTTGATTGGCGGCATGGTCGTCGCGATGTACCTGCCT
ATCTTCAAGCTGGGGTCGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.364

98.284

0.534
  pilC Legionella pneumophila strain ERS1305867

54.66

97.304

0.532
  pilG Neisseria gonorrhoeae MS11

52.882

97.794

0.517
  pilG Neisseria meningitidis 44/76-A

52.632

97.794

0.515
  pilC Acinetobacter baumannii D1279779

51.5

98.039

0.505
  pilC Acinetobacter baylyi ADP1

50

98.039

0.49
  pilC Vibrio cholerae strain A1552

40.25

98.039

0.395
  pilC Vibrio campbellii strain DS40M4

38.631

100

0.387