Detailed information NTG0568595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI608_RS03465
• Genome accession: NZ_CP075192
• Coordinates: 732664..733518 (-)
• Length: 284 a.a.
• NCBI ID: WP_226450634.1
• Uniprot ID: -
• Organism: Ferribacterium limneticum strain 132
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 727664..738518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI608_RS03430 (KI608_03435)	-	728180..728596 (-)	417	WP_226450628.1	Hsp20/alpha crystallin family protein	-
KI608_RS03435 (KI608_03440)	nudB	728657..729109 (-)	453	WP_226450629.1	dihydroneopterin triphosphate diphosphatase	-
KI608_RS03440 (KI608_03445)	-	729106..729534 (-)	429	WP_226450630.1	barstar family protein	-
KI608_RS03445 (KI608_03450)	-	729545..729904 (-)	360	WP_226450631.1	ribonuclease domain-containing protein	-
KI608_RS03450 (KI608_03455)	aspS	729911..731710 (-)	1800	WP_226450632.1	aspartate--tRNA ligase	-
KI608_RS03455 (KI608_03460)	-	731728..732342 (-)	615	WP_226451833.1	DUF502 domain-containing protein	-
KI608_RS03460 (KI608_03465)	-	732342..732593 (-)	252	WP_226450633.1	zinc ribbon domain-containing protein	-
KI608_RS03465 (KI608_03470)	pilD	732664..733518 (-)	855	WP_226450634.1	A24 family peptidase	Machinery gene
KI608_RS03470 (KI608_03475)	pilC	733518..734744 (-)	1227	WP_226450635.1	type II secretion system F family protein	Machinery gene
KI608_RS03475 (KI608_03480)	pilB	734760..736475 (-)	1716	WP_226450636.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI608_RS03480 (KI608_03485)	-	736555..737739 (-)	1185	WP_404826784.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30312.91 Da
• Isoelectric Point: 7.2184

>NTDB_id=568595 KI608_RS03465 WP_226450634.1 732664..733518(-) (pilD) [Ferribacterium limneticum strain 132]
MLPETQGGLAAVAGLLGLCVGSFLNVVIHRLPKMMEREWLGQCAELRGETAPADSEPLSLAKPRSRCPDCGHQITALENI
PLLSYLLVLKGKCSGCGNRISPRYPIIEAITGLLSAYVAWHFGPTAQAAGALLLLWALISLSAIDLDTQLLPDSITLPLL
WLGLLFNLWSTFTDLPSAVIGAMAGYLALWTVFWLFKLSTGKEGMGYGDFKLLAALGAWLGWQMLPAIILLSSVVGAAVG
ITLIIATRHGRNVPIPFGPYLAAAGVIALFWGTQITNTYLGMIG

Nucleotide

• Length: 855 bp

>NTDB_id=568595 KI608_RS03465 WP_226450634.1 732664..733518(-) (pilD) [Ferribacterium limneticum strain 132]
ATGCTCCCGGAAACTCAGGGCGGCCTGGCTGCCGTAGCCGGGCTGCTTGGCTTGTGCGTCGGCAGCTTTCTCAACGTTGT
CATTCATCGACTACCCAAGATGATGGAGCGGGAATGGCTCGGGCAATGCGCAGAATTGCGGGGCGAAACAGCCCCAGCAG
ATTCTGAACCTTTGTCGTTGGCAAAACCGCGTTCCCGCTGCCCGGATTGCGGCCATCAAATAACGGCGCTGGAAAATATC
CCGCTGCTGAGCTATCTATTGGTTCTGAAGGGAAAATGCTCCGGATGTGGAAACAGAATTTCTCCACGCTACCCCATCAT
TGAAGCGATTACAGGGCTTCTATCAGCTTACGTCGCCTGGCATTTTGGGCCGACGGCACAGGCAGCAGGTGCCCTGCTAC
TGCTCTGGGCGCTGATATCCCTGTCAGCCATAGACCTGGATACCCAATTACTCCCCGACTCGATCACCCTGCCTTTGCTG
TGGCTCGGACTGCTTTTCAATCTATGGTCTACGTTCACCGATCTCCCGTCAGCCGTCATCGGTGCCATGGCAGGTTATCT
GGCGCTATGGACCGTATTCTGGCTTTTCAAGCTGAGTACAGGCAAGGAGGGCATGGGCTACGGAGACTTCAAACTTCTGG
CCGCTCTAGGTGCATGGCTAGGCTGGCAAATGCTGCCGGCAATCATCCTGCTCTCCTCGGTCGTTGGCGCTGCGGTCGGC
ATCACGCTGATCATCGCTACTCGCCATGGCCGCAATGTTCCTATTCCCTTCGGCCCCTACTTGGCAGCGGCAGGAGTGAT
CGCTCTGTTCTGGGGGACGCAGATCACGAACACCTACCTTGGCATGATCGGTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-122)

• Type IV leader peptidase family (Peptidase_A24) (132-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.412	95.775	0.521
pilD	Vibrio campbellii strain DS40M4	53.069	97.535	0.518
pilD	Acinetobacter nosocomialis M2	52.33	98.239	0.514
pilD	Acinetobacter baumannii D1279779	52.33	98.239	0.514
pilD	Neisseria gonorrhoeae MS11	52.14	90.493	0.472