Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI610_RS16640 Genome accession   NZ_CP075189
Coordinates   3476560..3477786 (+) Length   408 a.a.
NCBI ID   WP_226496064.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3465110..3477786 3476560..3477786 within 0


Gene organization within MGE regions


Location: 3465110..3477786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS16575 (KI610_16490) - 3465110..3465511 (-) 402 WP_226496053.1 polymer-forming cytoskeletal protein -
  KI610_RS16580 (KI610_16495) - 3465523..3466101 (-) 579 WP_226496054.1 DUF6776 family protein -
  KI610_RS16585 (KI610_16500) rpsI 3466435..3466827 (-) 393 WP_226403796.1 30S ribosomal protein S9 -
  KI610_RS16590 (KI610_16505) rplM 3466837..3467265 (-) 429 WP_117607868.1 50S ribosomal protein L13 -
  KI610_RS16595 (KI610_16510) - 3467769..3468197 (+) 429 WP_226496055.1 OsmC family protein -
  KI610_RS16600 (KI610_16515) coq7 3468214..3468837 (-) 624 WP_226496056.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  KI610_RS16605 (KI610_16520) - 3468842..3469357 (-) 516 WP_226496057.1 CNP1-like family protein -
  KI610_RS16610 (KI610_16525) - 3469360..3469908 (-) 549 WP_226496058.1 RNA pyrophosphohydrolase -
  KI610_RS16615 (KI610_16530) - 3470019..3471749 (+) 1731 WP_226496059.1 proline--tRNA ligase -
  KI610_RS16620 (KI610_16535) - 3471737..3472348 (+) 612 WP_226496060.1 lytic transglycosylase domain-containing protein -
  KI610_RS16625 (KI610_16540) ffh 3472418..3473773 (-) 1356 WP_226496061.1 signal recognition particle protein -
  KI610_RS16630 (KI610_16545) - 3473803..3474642 (+) 840 WP_226496062.1 inner membrane protein YpjD -
  KI610_RS16635 (KI610_16550) pilB 3474829..3476544 (+) 1716 WP_226496063.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI610_RS16640 (KI610_16555) pilC 3476560..3477786 (+) 1227 WP_226496064.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44397.26 Da        Isoelectric Point: 9.9263

>NTDB_id=568533 KI610_RS16640 WP_226496064.1 3476560..3477786(+) (pilC) [Ferribacterium limneticum strain 77]
MATAARSRASAVKENTFLWEGKNKDGKAVRGEMRAASDSVVQTTLRRQGITSIKAKKVRFKTGGTITEKDISLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKSDVETGSSLSQAFRKFPLQFDALYCNLVAAGEQAGILDTLLDRLATYK
EKIIAIKGKIKSALFYPIAVLVVAFIITAVIMIFVIPAFKDVFKSFGADLPAPTLFVIALSDFFVAYWWAIFGILGGGLY
TFLESWKRSEKIQMAMDRLLLKMPVFGEIVRKSVIARWTRTLATMFAAGVPLVESLESVGGAAGNHVYKVATRQIQSEVS
TGTNLTTAMQNVNLFPNMVIQMVSIGEESGALDSMLSKVADFFEQEVDDAVDAMSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKIGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568533 KI610_RS16640 WP_226496064.1 3476560..3477786(+) (pilC) [Ferribacterium limneticum strain 77]
ATGGCTACCGCCGCAAGATCTAGGGCCTCGGCAGTCAAGGAAAACACCTTCCTCTGGGAGGGAAAGAACAAAGATGGCAA
AGCCGTTCGCGGAGAAATGCGCGCAGCCAGCGACTCCGTCGTGCAAACCACGCTGCGTCGGCAAGGCATAACCAGCATTA
AGGCCAAGAAAGTCCGCTTCAAGACTGGTGGCACGATTACGGAAAAAGATATTTCCCTGTTCACCCGCCAGTTGGCGACC
ATGATGAAATCAGGCGTCCCGCTGTTGCAGTCGTTCGATATCGTCGGTCGAGGACACTCCAATCCCGCAGTCGGCAAATT
ACTGCTCGATATTAAGTCAGATGTTGAAACAGGCAGTTCCCTGTCTCAAGCGTTCCGCAAGTTTCCACTGCAATTCGATG
CACTGTATTGCAATCTCGTCGCAGCTGGCGAACAGGCCGGCATTCTGGACACATTGCTGGACCGCCTTGCAACCTATAAG
GAAAAAATAATAGCAATCAAAGGCAAGATAAAGTCTGCACTGTTCTACCCGATTGCAGTCTTGGTTGTTGCCTTCATCAT
CACTGCCGTGATCATGATTTTCGTGATCCCAGCATTTAAGGATGTGTTCAAGAGCTTTGGTGCCGACCTCCCAGCGCCGA
CCTTGTTTGTGATTGCGCTTTCAGACTTTTTCGTTGCCTATTGGTGGGCGATATTCGGCATTCTTGGCGGTGGCCTCTAT
ACATTTCTTGAGAGCTGGAAGCGCTCAGAAAAAATCCAGATGGCCATGGATCGACTACTTCTGAAAATGCCCGTTTTTGG
AGAAATTGTCCGCAAGTCAGTAATTGCTAGATGGACCAGAACCTTGGCCACTATGTTTGCTGCCGGCGTACCACTGGTCG
AATCCCTTGAGTCAGTCGGCGGCGCGGCCGGCAATCACGTTTACAAAGTTGCGACCCGACAAATTCAAAGTGAGGTGTCC
ACAGGTACCAACCTGACTACCGCAATGCAGAACGTGAATCTATTTCCCAACATGGTAATTCAGATGGTATCCATCGGCGA
AGAGTCTGGTGCGTTGGATTCCATGCTCTCCAAGGTTGCCGATTTTTTTGAACAGGAAGTCGATGACGCTGTGGATGCGA
TGTCCAGCCTGATGGAGCCCATCATCATGGTAGTCCTCGGTACGCTGATTGGCGGCATGGTTGTTGCAATGTATCTACCA
ATATTCAAGATCGGAGCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.912

97.304

0.534
  pilC Pseudomonas stutzeri DSM 10701

53.865

98.284

0.529
  pilG Neisseria gonorrhoeae MS11

52.381

97.794

0.512
  pilG Neisseria meningitidis 44/76-A

52.13

97.794

0.51
  pilC Acinetobacter baumannii D1279779

51.005

97.549

0.498
  pilC Acinetobacter baylyi ADP1

49.622

97.304

0.483
  pilC Vibrio cholerae strain A1552

41.058

97.304

0.4
  pilC Vibrio campbellii strain DS40M4

38.557

98.529

0.38
  pilC Thermus thermophilus HB27

36.538

100

0.373