Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI611_RS18050 Genome accession   NZ_CP075185
Coordinates   3775878..3777104 (+) Length   408 a.a.
NCBI ID   WP_226417033.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3770878..3782104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS18035 (KI611_17990) - 3771957..3772796 (+) 840 WP_226417030.1 inner membrane protein YpjD -
  KI611_RS18040 (KI611_17995) - 3772800..3774071 (+) 1272 WP_226417031.1 HlyC/CorC family transporter -
  KI611_RS18045 (KI611_18000) pilB 3774148..3775863 (+) 1716 WP_226417032.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI611_RS18050 (KI611_18005) pilC 3775878..3777104 (+) 1227 WP_226417033.1 type II secretion system F family protein Machinery gene
  KI611_RS18055 (KI611_18010) pilD 3777104..3777952 (+) 849 WP_226417034.1 prepilin peptidase Machinery gene
  KI611_RS18060 (KI611_18015) - 3778023..3778286 (+) 264 WP_226417035.1 FmdB family zinc ribbon protein -
  KI611_RS18065 (KI611_18020) - 3778286..3778900 (+) 615 WP_226419944.1 DUF502 domain-containing protein -
  KI611_RS18070 (KI611_18025) aspS 3778918..3780720 (+) 1803 WP_226417036.1 aspartate--tRNA ligase -
  KI611_RS18075 (KI611_18030) - 3780726..3781088 (+) 363 WP_226417037.1 ribonuclease domain-containing protein -
  KI611_RS18080 (KI611_18035) - 3781101..3781529 (+) 429 WP_226417038.1 barstar family protein -
  KI611_RS18085 (KI611_18040) nudB 3781526..3781978 (+) 453 WP_226417039.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44288.22 Da        Isoelectric Point: 10.0043

>NTDB_id=568441 KI611_RS18050 WP_226417033.1 3775878..3777104(+) (pilC) [Dechloromonas denitrificans strain 110]
MATAAKPRASGVKESAFLWEGRNKDGKTVRGEIRAASESVVQTTLRRQGITNTKVKKVRFKSGGKITDKDISLFTRQLAT
MMKSGVPLLQAFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKFPLQFDALYCNLVAAGEQAGILDTLLDRLATYK
EKIIAIKSKIKSALFYPIAIIVVAIVITAVIMIFVIPAFKEVFKSFGADLPAPTLIVMAISDFFVAYWWAIFGAIGGGFY
ALFESWKRSEKVQMTMDRLLLRMPIFGDIIRKSVIARWTRTLATMFAAGVPLVESLDSVGGAAGNHVYKVATKQIQSEVS
TGTSLTISMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPIIMVILGTLIGGMVVAMYLP
IFKLGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568441 KI611_RS18050 WP_226417033.1 3775878..3777104(+) (pilC) [Dechloromonas denitrificans strain 110]
ATGGCTACCGCCGCAAAACCGAGAGCCTCGGGAGTCAAGGAAAGCGCCTTCCTTTGGGAAGGCCGCAACAAGGATGGCAA
GACCGTACGGGGTGAAATCCGCGCCGCCAGCGAATCGGTGGTGCAAACCACGCTGCGCCGACAGGGCATAACCAACACCA
AGGTCAAAAAGGTTCGCTTCAAGAGCGGCGGCAAGATCACCGACAAGGACATCTCGTTATTTACCCGCCAACTGGCGACC
ATGATGAAATCGGGGGTTCCGCTGTTACAAGCCTTCGACATCGTTGGTCGCGGACACTCGAATCCGGCAGTTGGCAAACT
GCTGCTTGACATCAAGGCTGACGTCGAGACGGGCAGTTCGCTTTCTCAGGCATTCCGGAAATTCCCCCTGCAATTCGATG
CGCTTTATTGCAATCTGGTTGCCGCCGGCGAACAGGCCGGCATTCTCGACACCCTGCTTGACCGCCTGGCCACTTACAAG
GAAAAGATCATTGCCATCAAAAGCAAGATCAAATCCGCTCTGTTCTACCCAATCGCCATTATCGTCGTCGCAATCGTTAT
CACAGCTGTGATCATGATTTTCGTCATTCCGGCATTCAAGGAAGTATTCAAGAGTTTCGGGGCGGATTTGCCGGCACCGA
CACTCATCGTCATGGCTATCTCCGATTTTTTCGTGGCCTACTGGTGGGCGATTTTTGGTGCCATCGGCGGCGGTTTTTAT
GCCCTCTTCGAAAGCTGGAAGCGTTCGGAAAAGGTTCAAATGACCATGGATCGCCTACTTCTTCGTATGCCAATTTTTGG
CGACATCATCCGCAAATCGGTAATAGCCCGCTGGACCCGCACTCTGGCTACGATGTTTGCCGCGGGCGTGCCGCTGGTCG
AGTCGCTCGACTCCGTTGGTGGCGCGGCGGGCAACCACGTTTACAAGGTGGCCACCAAGCAGATACAGAGCGAAGTGTCC
ACCGGCACCAGCCTGACCATCTCGATGCAGAATGTAAATCTATTTCCCAACATGGTGACCCAAATGGTTGCCATCGGCGA
GGAATCAGGAGCGCTCGACTCAATGCTTTCCAAGGTTGCCGACTTCTTCGAGGCGGAAGTCGACGATGCCGTCGAGGCGA
TGTCCAGCCTGATGGAGCCGATCATCATGGTCATCCTCGGCACGCTGATCGGCGGCATGGTCGTCGCCATGTACCTGCCG
ATCTTCAAACTGGGTGCAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.303

97.059

0.537
  pilG Neisseria gonorrhoeae MS11

54.66

97.304

0.532
  pilG Neisseria meningitidis 44/76-A

54.408

97.304

0.529
  pilC Pseudomonas stutzeri DSM 10701

53

98.039

0.52
  pilC Acinetobacter baumannii D1279779

50.877

97.794

0.498
  pilC Acinetobacter baylyi ADP1

50.126

97.304

0.488
  pilC Vibrio cholerae strain A1552

41.162

97.059

0.4
  pilC Vibrio campbellii strain DS40M4

39.75

98.039

0.39